Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00149
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 111 9e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 111 9e-26
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.45
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 27 1.8
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.4
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 5.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 5.5
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.7
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 111 bits (267), Expect = 9e-26
Identities = 51/87 (58%), Positives = 62/87 (71%)
Frame = +1
Query: 253 HQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKIN 432
+ LK R+ + AEE +SYWV QD++YK+FEVILVDPSHKAI RDP+IN
Sbjct: 90 NHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRIN 149
Query: 433 WIVNAVHKHREMRGLTSAGRSSRGLAR 513
WIVN VHKHRE RGLTS G+ SRG+ +
Sbjct: 150 WIVNPVHKHRESRGLTSIGKKSRGIGK 176
Score = 99.1 bits (236), Expect = 5e-22
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = +2
Query: 2 YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 6 YLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIR 65
Query: 182 XXXXXXXXPVAKGATYGKHKSHGV 253
PV KG TYGK GV
Sbjct: 66 VRRGGRKRPVPKGQTYGKPVHQGV 89
Score = 32.3 bits (70), Expect = 0.064
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
KGHR++ + + A WLR NTL LRR R
Sbjct: 176 KGHRFNNSP---QHATWLRHNTLSLRRYR 201
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 111 bits (267), Expect = 9e-26
Identities = 51/87 (58%), Positives = 62/87 (71%)
Frame = +1
Query: 253 HQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKIN 432
+ LK R+ + AEE +SYWV QD++YK+FEVILVDPSHKAI RDP+IN
Sbjct: 90 NHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRIN 149
Query: 433 WIVNAVHKHREMRGLTSAGRSSRGLAR 513
WIVN VHKHRE RGLTS G+ SRG+ +
Sbjct: 150 WIVNPVHKHRESRGLTSIGKKSRGIGK 176
Score = 99.1 bits (236), Expect = 5e-22
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = +2
Query: 2 YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 6 YLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIR 65
Query: 182 XXXXXXXXPVAKGATYGKHKSHGV 253
PV KG TYGK GV
Sbjct: 66 VRRGGRKRPVPKGQTYGKPVHQGV 89
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
KGHRY+ + + A WLR NTL LRR R
Sbjct: 176 KGHRYNNSP---QHATWLRHNTLSLRRYR 201
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 29.5 bits (63), Expect = 0.45
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 347 LHKILHTSISRLSSWTRHTRPLVAILRSTGS*MLYISI 460
L+KIL S ++ ++T H P+V ++ S LYIS+
Sbjct: 47 LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 295 PQQWIEGCAWASTGDTMALMLAISGTLSNWTLAA 194
P ++IE AW G M++++ + GTL+ + +A+
Sbjct: 261 PVRFIESPAWKEFGPFMSVVILVPGTLAFFMVAS 294
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 352 QDSSYKYFEVILVDPSHKAISRDPKINWIVNAVHK 456
+ S KY E P H ++ PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 561 AKLPGVSLPLFESIYVPCETSGAATSRSQTTHLTMLMYSIH 439
A+L LPL ESI + S T SQ+T +T + S H
Sbjct: 817 ARLNEEELPLTESITQDSQISIPETLESQSTEITPINVSEH 857
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 476 RPRISRCLCTAFTIQLILGSRLM 408
+P + CL ++F+ ++LGSRL+
Sbjct: 815 KPFLQACLTSSFSTPVVLGSRLI 837
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 53 LRVRVWQYRQLTRMHRAPRPTRPD 124
L+ +W Y L R++ PR PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 309 SLRWSPCVELLLGCTRFF 362
SL+ P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,573
Number of Sequences: 5004
Number of extensions: 50644
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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