Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00149
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 105 2e-23
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 105 2e-23
04_03_0320 - 14316934-14318550 29 2.5
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 29 3.3
05_04_0358 - 20610812-20611061,20611537-20611637 29 3.3
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 29 4.3
01_01_0680 + 5217633-5219072 28 5.7
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 105 bits (253), Expect = 2e-23
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +1
Query: 256 QLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKINW 435
QLK RN +S+AEE +SYWV +DS+YKYFE+ILVD +H AI DP+INW
Sbjct: 196 QLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINW 255
Query: 436 IVNAVHKHREMRGLTSAGRSSRGL 507
+ VHKHRE+RGLTSAG+ RGL
Sbjct: 256 LCKPVHKHRELRGLTSAGKKYRGL 279
Score = 100 bits (240), Expect = 9e-22
Identities = 47/85 (55%), Positives = 55/85 (64%)
Frame = +2
Query: 2 YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGY
Sbjct: 111 YVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVR 170
Query: 182 XXXXXXXXPVAKGATYGKHKSHGVT 256
PV KG YGK K G+T
Sbjct: 171 VRRGGRKRPVPKGIVYGKPKHQGIT 195
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
KGH + + + SRRA W R T+ LRR R
Sbjct: 282 KGHTHHKARP-SRRATWKRNQTVSLRRYR 309
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 105 bits (253), Expect = 2e-23
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +1
Query: 256 QLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKINW 435
QLK RN +S+AEE +SYWV +DS+YKYFE+ILVD +H AI DP+INW
Sbjct: 91 QLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINW 150
Query: 436 IVNAVHKHREMRGLTSAGRSSRGL 507
+ VHKHRE+RGLTSAG+ RGL
Sbjct: 151 LCKPVHKHRELRGLTSAGKKYRGL 174
Score = 100 bits (240), Expect = 9e-22
Identities = 47/85 (55%), Positives = 55/85 (64%)
Frame = +2
Query: 2 YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGY
Sbjct: 6 YVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVR 65
Query: 182 XXXXXXXXPVAKGATYGKHKSHGVT 256
PV KG YGK K G+T
Sbjct: 66 VRRGGRKRPVPKGIVYGKPKHQGIT 90
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
KGH + + + SRRA W R T+ LRR R
Sbjct: 177 KGHTHHKARP-SRRATWKRNQTVSLRRYR 204
>04_03_0320 - 14316934-14318550
Length = 538
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 346 PSKSSTHGDHRNDGQHVPQQWIEGCAWASTGDTMALMLA 230
PS S GD +D + GC+WA D MA M+A
Sbjct: 480 PSCSRRDGDDDDDDDEDVGAVLPGCSWAGWFDDMAAMVA 518
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 373 FEVILVDPSHKAISRDPK 426
FE+ILVD +H AI DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
>05_04_0358 - 20610812-20611061,20611537-20611637
Length = 116
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 551 PA*ASLCL-RVSMSLARPRELRPAEVRPRISRCLCTAFTIQLILGSRLMALCDGSTRI 381
PA + CL VS SL R + P + + C + +G+ + ALC GSTR+
Sbjct: 17 PARLNPCLCEVSSSLQRATIIYPRAMSMEDNACHFSRVESDTSVGNGMRALCPGSTRL 74
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -3
Query: 364 MKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTGDTMALMLAISGTLSNWTLAATTS 185
MKN + ++ D N+ ++ I WAS G + + I+G + W + A +S
Sbjct: 222 MKNQITGAQRDAGEDEDNNISAEEEREICSLCWASQGGSTVAVGYITGDILLWDMTARSS 281
Query: 184 HTDS 173
D+
Sbjct: 282 KQDN 285
>01_01_0680 + 5217633-5219072
Length = 479
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 355 DSSYKYFEVILVDPSHKAISRDPKINWIVNAVHKHREMRGLTSAGRSSRGLARDIDTL 528
D ++ + DP H+ P I AV + EM G AG RG+ D++ +
Sbjct: 240 DEMPQFLTLYFEDPDHQGHQVGPDDPAITEAVVRIDEMIGRLIAGLEERGVFEDVNVI 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,925
Number of Sequences: 37544
Number of extensions: 378537
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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