Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00149
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   3e-26
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   3.4  
SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  115 bits (277), Expect = 3e-26
 Identities = 53/84 (63%), Positives = 62/84 (73%)
 Frame = +2

Query: 2   YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
           Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+      
Sbjct: 6   YLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFVIYRVR 65

Query: 182 XXXXXXXXPVAKGATYGKHKSHGV 253
                   PV KGATYGK  + GV
Sbjct: 66  VRRGGRKRPVPKGATYGKPVNQGV 89



 Score =  106 bits (255), Expect = 1e-23
 Identities = 48/87 (55%), Positives = 61/87 (70%)
 Frame = +1

Query: 253 HQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKIN 432
           ++LK  R+L+S+AEE            +SYWV QDS YKYFEVI+VDP HKAI RD +IN
Sbjct: 90  NELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMVDPFHKAIRRDARIN 149

Query: 433 WIVNAVHKHREMRGLTSAGRSSRGLAR 513
           WI    HKHRE+RGLT+AG  +RG+ +
Sbjct: 150 WICKPTHKHRELRGLTAAGTKNRGMRK 176



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +3

Query: 507 RKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
           RKGH Y++  G SRRA W R NTL LRR R
Sbjct: 175 RKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204


>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 507 ETSGAATSRSQTTHLTMLMYSIHDPVDLRIA 415
           ++SG AT +S    L + + S  DPVD+RIA
Sbjct: 205 KSSGNATHQSHNCCLDLRLMSSEDPVDVRIA 235


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 44  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 157
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 424 KINWIVNAVHKHREMRGLTSAG-RSSRGLARDIDTLKQREAHAGQL 558
           K N  V+A H  R +  L   G R S G  RDI  L+Q+E + G++
Sbjct: 92  KPNDEVSARHLRRRVSHLQKVGGRLSAGGERDIHHLRQKEKNEGEV 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,261,472
Number of Sequences: 59808
Number of extensions: 441650
Number of successful extensions: 1119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)