Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00149
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   132   5e-31
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   132   5e-31

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  132 bits (318), Expect = 5e-31
 Identities = 60/89 (67%), Positives = 67/89 (75%)
 Frame = +2

Query: 2   YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
           Y+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQG+      
Sbjct: 6   YMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFVIYRIR 65

Query: 182 XXXXXXXXPVAKGATYGKHKSHGVTS*SP 268
                   PV KG TYGK KSHGV    P
Sbjct: 66  VRRGGRKRPVPKGCTYGKPKSHGVNQLKP 94



 Score =  123 bits (296), Expect = 2e-28
 Identities = 58/99 (58%), Positives = 68/99 (68%)
 Frame = +1

Query: 217 GCHLWQA*EPWCHQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 396
           GC   +      +QLKP R LQSIAEE            +SYW+AQD+SYKYFEVIL+D 
Sbjct: 78  GCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDT 137

Query: 397 SHKAISRDPKINWIVNAVHKHREMRGLTSAGRSSRGLAR 513
            H AI RDPKINWI   VHKHRE+RGLTSAG+SSRG+ +
Sbjct: 138 HHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGK 176



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
           KG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 176 KGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  132 bits (318), Expect = 5e-31
 Identities = 60/89 (67%), Positives = 67/89 (75%)
 Frame = +2

Query: 2   YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
           Y+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQG+      
Sbjct: 6   YMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFVIYRIR 65

Query: 182 XXXXXXXXPVAKGATYGKHKSHGVTS*SP 268
                   PV KG TYGK KSHGV    P
Sbjct: 66  VRRGGRKRPVPKGCTYGKPKSHGVNQLKP 94



 Score =  123 bits (296), Expect = 2e-28
 Identities = 58/99 (58%), Positives = 68/99 (68%)
 Frame = +1

Query: 217 GCHLWQA*EPWCHQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 396
           GC   +      +QLKP R LQSIAEE            +SYW+AQD+SYKYFEVIL+D 
Sbjct: 78  GCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDT 137

Query: 397 SHKAISRDPKINWIVNAVHKHREMRGLTSAGRSSRGLAR 513
            H AI RDPKINWI   VHKHRE+RGLTSAG+SSRG+ +
Sbjct: 138 HHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGK 176



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
           KG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 176 KGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,136,350
Number of Sequences: 53049
Number of extensions: 614251
Number of successful extensions: 1940
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)