Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00149
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   115   3e-26
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   1.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   1.7  
AF016437-4|AAB65886.1|  416|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  115 bits (276), Expect = 3e-26
 Identities = 50/84 (59%), Positives = 61/84 (72%)
 Frame = +2

Query: 2   YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
           Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQG+      
Sbjct: 6   YMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVR 65

Query: 182 XXXXXXXXPVAKGATYGKHKSHGV 253
                   PV KG TYGK K+HGV
Sbjct: 66  VRRGNRKRPVCKGQTYGKPKTHGV 89



 Score =  103 bits (247), Expect = 1e-22
 Identities = 45/87 (51%), Positives = 60/87 (68%)
 Frame = +1

Query: 253 HQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKIN 432
           ++LK  ++ Q++AE             +SYWVA+DS+YK++EV+L+DP HKAI R+P   
Sbjct: 90  NELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLIDPFHKAIRRNPDTQ 149

Query: 433 WIVNAVHKHREMRGLTSAGRSSRGLAR 513
           WI   VHKHRE RGLTSAGR SRGL +
Sbjct: 150 WITKPVHKHREQRGLTSAGRKSRGLGK 176



 Score = 35.5 bits (78), Expect = 0.034
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
           KG R+S T+GGS+   W R+NT    RKR
Sbjct: 176 KGWRFSATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 355 DSSYKYFEVILVDPSHKAISRDPKINWIVNAVHKHREMR 471
           D  Y  F  +L D + K      K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 355 DSSYKYFEVILVDPSHKAISRDPKINWIVNAVHKHREMR 471
           D  Y  F  +L D + K      K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLETR 458


>AF016437-4|AAB65886.1|  416|Caenorhabditis elegans Hypothetical
           protein F13H6.5 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 295 PQQWIEGCAWASTGDTMALMLAISGTLSNWTLAATTSHT 179
           P  W+E   W S    M ++  ISGT+S W     T  T
Sbjct: 132 PIYWLEPLFWKSR-PYMMMVSNISGTMSTWLTLMVTMET 169


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 11  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 109
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 11  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 109
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,114,095
Number of Sequences: 27780
Number of extensions: 300789
Number of successful extensions: 721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)