Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00149
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           107   9e-24
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           107   9e-24
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    32   0.39 
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    32   0.39 
At1g11460.1 68414.m01316 nodulin MtN21 family protein similar to...    31   0.90 
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    30   1.2  
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST...    29   2.7  
At1g07220.1 68414.m00768 expressed protein                             28   4.8  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   8.4  
At3g18050.1 68416.m02296 expressed protein                             27   8.4  
At2g17010.1 68415.m01961 mechanosensitive ion channel domain-con...    27   8.4  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  107 bits (256), Expect = 9e-24
 Identities = 46/84 (54%), Positives = 61/84 (72%)
 Frame = +1

Query: 256 QLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKINW 435
           QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+ILVDP+H A+  DP+INW
Sbjct: 91  QLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINW 150

Query: 436 IVNAVHKHREMRGLTSAGRSSRGL 507
           I N VHKHRE+RGLTS G+ +RGL
Sbjct: 151 ICNPVHKHRELRGLTSEGKKNRGL 174



 Score =   99 bits (238), Expect = 1e-21
 Identities = 48/85 (56%), Positives = 55/85 (64%)
 Frame = +2

Query: 2   YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
           Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+      
Sbjct: 6   YVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVR 65

Query: 182 XXXXXXXXPVAKGATYGKHKSHGVT 256
                   PV KG  YGK  + GVT
Sbjct: 66  VRRGGRKRPVPKGIVYGKPTNQGVT 90



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
           KGH   + +  SRRA W + N++ LRR R
Sbjct: 177 KGHNNHKNRP-SRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  107 bits (256), Expect = 9e-24
 Identities = 46/84 (54%), Positives = 61/84 (72%)
 Frame = +1

Query: 256 QLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDPSHKAISRDPKINW 435
           QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+ILVDP+H A+  DP+INW
Sbjct: 91  QLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINW 150

Query: 436 IVNAVHKHREMRGLTSAGRSSRGL 507
           I N VHKHRE+RGLTS G+ +RGL
Sbjct: 151 ICNPVHKHRELRGLTSEGKKNRGL 174



 Score =   99 bits (238), Expect = 1e-21
 Identities = 48/85 (56%), Positives = 55/85 (64%)
 Frame = +2

Query: 2   YIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXXXXXX 181
           Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+      
Sbjct: 6   YVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVR 65

Query: 182 XXXXXXXXPVAKGATYGKHKSHGVT 256
                   PV KG  YGK  + GVT
Sbjct: 66  VRRGGRKRPVPKGIVYGKPTNQGVT 90



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 510 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 596
           KGH   + +  SRRA W + N+L LRR R
Sbjct: 177 KGHNNHKNRP-SRRATWKKNNSLSLRRYR 204


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 352 VQPSKSSTHG--DHRNDGQHVPQQWIEGCAWASTGDT-MALMLAISGTLS 212
           +  S S +HG   H N+ Q     W+ GC + + G   ++L +   GTLS
Sbjct: 118 ISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLS 167


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 352 VQPSKSSTHG--DHRNDGQHVPQQWIEGCAWASTGDT-MALMLAISGTLS 212
           +  S S +HG   H N+ Q     W+ GC + + G   ++L +   GTLS
Sbjct: 165 ISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLS 214


>At1g11460.1 68414.m01316 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 337

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -3

Query: 343 SKSSTHGD---HRNDGQHVPQQWIEGCAWASTGDTM-ALMLAISGTLS 212
           S S +H +   H N+  H  + W+ GC + + G  + +L +   GTLS
Sbjct: 166 SNSHSHQEALPHNNNSDHNTKNWLLGCLYLTIGTVLISLWILFQGTLS 213


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 340 YWVAQDSSYKYFEVILVDPSHKAISRDPKINWIV 441
           YW+AQ + +    V+  D  H + S DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
           identical to homeobox protein SHOOT MERISTEMLESS (STM)
           SP:Q38874 from [Arabidopsis thaliana]
          Length = 382

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
 Frame = -3

Query: 367 CMKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTGDTMALMLAIS-----GTLSNWT 203
           C   ++ P   ++H  H +D QH  QQ  +G A+ S     + +   S     GT +   
Sbjct: 24  CPMMMMMPPIMTSHQHHGHDHQH-QQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVA 82

Query: 202 LAATTSHTDSEYNVTLFSTVA*SSGFVRPCGPGSAVHTSQLTVLPYPH 59
            +++ S     Y++         +G + PC   S+  + +  ++ +PH
Sbjct: 83  SSSSPSSCAPAYSLMEIHHNEIVAGGINPCSSSSSSASVKAKIMAHPH 130


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 471 WSDFGWSQLPRSRKGHRYSQTKGGSRRAAWLRR 569
           WS +GWS+         +   K GSRR +W  +
Sbjct: 232 WSFWGWSETNLRPWEEEFGDIKQGSRRRSWYNK 264


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 62  RVWQYRQLTRMHRAPRPTRPD 124
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 125 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 6
           CP L AW   AY +T  +   S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


>At2g17010.1 68415.m01961 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 779

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 343 WVAQDSSYKYFEVILVDPSHKAISRDPKINWIVNAVHKHREM 468
           ++ +D + K   +    P +K IS+    NW+VNA  + R +
Sbjct: 486 FLREDEAMKTMGLFEGAPENKRISKSALKNWLVNAFRERRAL 527


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,569
Number of Sequences: 28952
Number of extensions: 282308
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)