Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00148
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine rece...    27   9.8  
U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine rece...    27   9.8  

>Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical
           protein C07C7.1 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 204 PGIPEISRNKQTERQTKIVKNVILVYVPYIYSYMHVVKRGYFNITNRHSNLIYMYRFYND 25
           P +P    NK    ++KI   V+L+ +P++   +  +    F I   H N  Y Y  ++ 
Sbjct: 72  PFLPTQKNNKILNSESKIFAFVVLLLLPHLRLIIFQLFLVLFLIPRHHHNFCYFYSTHDG 131

Query: 24  E 22
           +
Sbjct: 132 Q 132


>U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform b protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 25  VVIKSIHIN*IGVSVCNIEITSF-YYMHI*IYIRN 126
           +V  SIH+  IG+SVC++ + S   Y H    +RN
Sbjct: 61  MVNNSIHVMMIGISVCDLLLMSLGVYGHFDFLLRN 95


>U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform a protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 25  VVIKSIHIN*IGVSVCNIEITSF-YYMHI*IYIRN 126
           +V  SIH+  IG+SVC++ + S   Y H    +RN
Sbjct: 61  MVNNSIHVMMIGISVCDLLLMSLGVYGHFDFLLRN 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,741
Number of Sequences: 27780
Number of extensions: 304443
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)