Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00146X
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 157 1e-39
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 156 3e-39
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.7
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 26 3.5
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 8.1
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 157 bits (380), Expect = 1e-39
Identities = 82/170 (48%), Positives = 100/170 (58%)
Frame = +2
Query: 5 KSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA 184
K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA
Sbjct: 13 KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRA 72
Query: 185 VARIPRVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYRS 364
+ARIPRV GGGTHRSGQ AFGNM P V +
Sbjct: 73 LARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASG 132
Query: 365 PSARSX*RTHY*KDSPSFPLVVADKVQEINKTKQAVIFLRRLKAWSDILR 514
+ R H ++ P PLVV D VQ KTK+AV L+ +KA+ D+++
Sbjct: 133 VPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIK 182
Score = 63.3 bits (147), Expect = 3e-11
Identities = 35/110 (31%), Positives = 49/110 (44%)
Frame = +1
Query: 256 RGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXQESQRSFXLEDTLLKRFPELPTGCSR 435
R GRMFAPTK WR+WH ++ PE+P
Sbjct: 97 RSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDD 156
Query: 436 QSPGDQQDQTGCHLPEAPQGMV*YLKVYKSQRLRAGKGKMRNRRRIQRKG 585
Q+ + L + + +KV S++LRAGKGK+RNRR +QR+G
Sbjct: 157 AVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRG 206
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 156 bits (378), Expect = 3e-39
Identities = 82/170 (48%), Positives = 100/170 (58%)
Frame = +2
Query: 5 KSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA 184
K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA
Sbjct: 13 KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRA 72
Query: 185 VARIPRVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYRS 364
+ARIPRV GGGTHRSGQ AFGNM P V +
Sbjct: 73 LARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASG 132
Query: 365 PSARSX*RTHY*KDSPSFPLVVADKVQEINKTKQAVIFLRRLKAWSDILR 514
+ R H ++ P PLVV D VQ KTK+AV L+ +KA+ D+++
Sbjct: 133 VPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVK 182
Score = 62.9 bits (146), Expect = 3e-11
Identities = 35/110 (31%), Positives = 49/110 (44%)
Frame = +1
Query: 256 RGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXQESQRSFXLEDTLLKRFPELPTGCSR 435
R GRMFAPTK WR+WH ++ PE+P
Sbjct: 97 RSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDD 156
Query: 436 QSPGDQQDQTGCHLPEAPQGMV*YLKVYKSQRLRAGKGKMRNRRRIQRKG 585
Q+ + L + + +KV S++LRAGKGK+RNRR +QR+G
Sbjct: 157 AVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRG 206
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 267 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVXARGH 392
+ PH L + AP QP E +V P+ +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +2
Query: 170 GTGRAVARIPRVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSG 328
G+ A A P V+GG R G G +G + +SPG +S G
Sbjct: 1498 GSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPG 1550
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Frame = +2
Query: 17 VQGAAKPLPFVFKAPIRPDLVNDVHVSM-------SKNSRQPYCVSKEAGHQTSAESWGT 175
+ G+ + LPF F +P L+N++H +M K Q + + T
Sbjct: 745 LSGSNEVLPFRF-SPTMCILLNNIHFAMHAYEELEQKIDLQRLIEALDVAESTKRHKISA 803
Query: 176 GRAVARIPRVRGGGTHRSGQGAFGNMFVV 262
+ I VRG G H G G ++V
Sbjct: 804 TNYLYTIKVVRGEGLHPDGAGKIRTSYIV 832
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Frame = +2
Query: 71 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR-------S 229
DLV+ + N + P GH S +S GR + + + + S
Sbjct: 161 DLVSVPEIFEQSNPK-PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANS 219
Query: 230 GQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGER 334
G+G+F +++D R+ G VAST+ ++
Sbjct: 220 GKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,056
Number of Sequences: 5004
Number of extensions: 45355
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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