Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00146X
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 146 9e-36
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_10373| Best HMM Match : PKD (HMM E-Value=5) 31 0.69
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.8
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 29 2.8
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17) 28 4.9
SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4) 28 4.9
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 4.9
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8) 27 8.5
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 27 8.5
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 146 bits (355), Expect = 9e-36
Identities = 83/165 (50%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Frame = +2
Query: 38 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 217
LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGG
Sbjct: 21 LPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGG 80
Query: 218 THRSGQGAFGNMFVVDVCSPPR--SPGGVGTVASTSDSGERPWRQRCCYRSPSARS---X 382
THRSGQGAFGNM C R +P T + ++ C + SA
Sbjct: 81 THRSGQGAFGNM-----CRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIM 135
Query: 383 *RTHY*KDSPSFPLVVADKVQEINKTKQAVIFLRRLKAWSDILRC 517
R H + PLV++D ++ + KT AV L+ + A+ D+ +C
Sbjct: 136 ARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKC 180
Score = 60.9 bits (141), Expect = 7e-10
Identities = 35/110 (31%), Positives = 46/110 (41%)
Frame = +1
Query: 256 RGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXQESQRSFXLEDTLLKRFPELPTGCSR 435
RGGRMFAPTK WR+WH +++ E+P S
Sbjct: 94 RGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISD 153
Query: 436 QSPGDQQDQTGCHLPEAPQGMV*YLKVYKSQRLRAGKGKMRNRRRIQRKG 585
+ L +A K S+++RAGKGKMRNRR + RKG
Sbjct: 154 AIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKG 203
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 248 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 135
Y +HP T+ YH H R H Q+P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 248 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 141
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 239 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 138
HP T+ YH H R H Q+P + H + P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 248 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 156
Y +HP T+ YH R Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272
>SB_10373| Best HMM Match : PKD (HMM E-Value=5)
Length = 230
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -1
Query: 585 SLTLDTTTVAHFTLTSTKTLRLVHLKISDHALRRLRKMTACLVLLISWTLSATTSGKLGE 406
+LTL T TLT T ++ L L R +T L L +S TLS T + LG
Sbjct: 33 TLTLTLTLTLTLTLTLTLSVTLTLTLTRTLTLTRTLSLTLTLTLSLSLTLSLTLTLTLGR 92
Query: 405 S 403
S
Sbjct: 93 S 93
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 263 PPRTCYRRHPDRTYEYHH 210
PP++C + HP Y YHH
Sbjct: 332 PPKSCRKSHPYPIYTYHH 349
>SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 272 NIRPPRTCYRRHPDRTYEYHHHGH 201
N+ P RRH R++ +HHH H
Sbjct: 18 NVSSPSLSCRRHDYRSHHHHHHPH 41
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 71 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 196
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = -2
Query: 251 CYRRHP-----DRTYEYHHHGHAEFGRQHVQYPMIQHWF 150
CYR H Y Y+ H H + R H YP +H++
Sbjct: 16 CYRHHHYCCYCHHRYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
Length = 278
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 269 IRPPRTCYRRHPDRTYEYHHHGHAEFGRQHV 177
I P +TC+ HP + Y H+ H F + H+
Sbjct: 47 ISPKKTCFPYHPHYHHHYRHNDH-YFHQDHL 76
>SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4)
Length = 145
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = +1
Query: 421 TGCSRQSPGDQQDQTGCHLPEAPQGMV*YLKVYKSQRLRAGKGKMRNRRRIQRKG 585
TGC R +Q TGC+ AP+GM R RA KG R RKG
Sbjct: 78 TGCHRTRA--RQGMTGCYRTRAPKGMT------GCHRTRARKGMTGCYRTRARKG 124
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 65 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 187
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 251 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 156
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +2
Query: 200 RVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCY 358
++ GG T S A G V DV GGV S +P + C Y
Sbjct: 1218 KINGGETSPSRSAADGRSSVDDVFDSDHGSGGVTMKGEGSFERSKPTEENCDY 1270
>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
Length = 815
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 275 ANIRPPRTCYRRHPDRTYEYHHHGHAEFGRQH 180
ANIRP R Y H Y +HHH H H
Sbjct: 371 ANIRPNR--YLHHLHDYYLHHHHLHHNHKNDH 400
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 242 RHPDRTYEYHHHGHAEFGRQH 180
RH R + +HHH H E+ R+H
Sbjct: 332 RHRHR-HRHHHHHHHEYNRRH 351
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,235,173
Number of Sequences: 59808
Number of extensions: 407547
Number of successful extensions: 1167
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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