Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00146X
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   131   3e-31
Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical p...    28   5.6  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    28   5.6  
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    27   7.4  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    27   9.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  131 bits (317), Expect = 3e-31
 Identities = 78/169 (46%), Positives = 92/169 (54%)
 Frame = +2

Query: 2   EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 181
           EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGR
Sbjct: 12  EKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGR 70

Query: 182 AVARIPRVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYR 361
           AVARIPRVRGGGTHRSGQGAFGNM        P                           
Sbjct: 71  AVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAAS 130

Query: 362 SPSARSX*RTHY*KDSPSFPLVVADKVQEINKTKQAVIFLRRLKAWSDI 508
              A    R H        PLVV+DKV+   KTK+AV+FLRR   W+DI
Sbjct: 131 GIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADI 179



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 31/110 (28%), Positives = 44/110 (40%)
 Frame = +1

Query: 256 RGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXQESQRSFXLEDTLLKRFPELPTGCSR 435
           RGG MFAP K +RRWH                              ++ +  E+P   S 
Sbjct: 96  RGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSD 155

Query: 436 QSPGDQQDQTGCHLPEAPQGMV*YLKVYKSQRLRAGKGKMRNRRRIQRKG 585
           +    ++ +                KVY S+R RAGKGK+RNR+  Q+ G
Sbjct: 156 KVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLG 205



 Score = 33.9 bits (74), Expect = 0.085
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +3

Query: 336 LGGSVAATGVPALVXARGHIIEKI 407
           +  ++AA+G+PAL+ ARGH+I+++
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQV 146


>Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical
           protein R06A4.9 protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 281 VGANIRPPRTCYRRHPDRTYEYHHHGHAEFGRQHV 177
           V   I+P  +  +    R    HHH H  F R+HV
Sbjct: 14  VTLTIQPSTSSMQNSQPRIMNNHHHPHNRFQREHV 48


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 203 VRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVAS---TSDSGERP 337
           +RG        G  GN  +   C PP +PG  G   S     D GERP
Sbjct: 212 MRGARGQPGRPGRDGNPGMPGDCGPPGAPGSDGKPGSPGGKGDDGERP 259


>U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical
           protein T20D4.3 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 395 Y*KDSPSFPLVVADKVQEINKTKQAV 472
           Y KD PS+PL     V E+N T + +
Sbjct: 408 YWKDEPSYPLTTTTAVTEMNTTPKTI 433


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 203 VRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVAS---TSDSGERP 337
           +RG        G  GN  +   C PP +PG  G   S     D GERP
Sbjct: 212 MRGARGQPGRPGRDGNPGMPGDCGPPGAPGSDGKPGSPGGKGDDGERP 259


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 179 RAVARIPRVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERP 337
           R  ++ PR  G G+  + Q   G+       S PR PG     ASTSD+ + P
Sbjct: 54  RGSSQSPRGYGYGSSSAPQ-YLGSSQYPQGSSAPRYPGNYNAFASTSDAPQYP 105


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 565 DGCAFYPYQHEDAETCTP*DIRPCLEAPQE 476
           D CA  P Q + A  C P    PC   PQ+
Sbjct: 61  DPCACQPQQQQPACNCAPVQQDPCACQPQQ 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,937
Number of Sequences: 27780
Number of extensions: 286145
Number of successful extensions: 993
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)