Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00146X
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.24 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 318 EVDATVPTPPGLRGGEHTSTT 256
           ++D  +P PP +RGGE T  T
Sbjct: 370 DLDEPLPPPPPIRGGEWTFDT 390


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 272 SPPRSPGGVGT 304
           SPPR PGGV T
Sbjct: 397 SPPRGPGGVPT 407



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 218 YHHHGHAEFGRQHVQY 171
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,420
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)