Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00146X
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   135   2e-32
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   135   2e-32
At2g10350.1 68415.m01087 Ulp1 protease family protein similar to...    29   3.0  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   4.0  
At5g01010.1 68418.m00001 expressed protein                             28   5.3  
At2g32710.2 68415.m04003 kip-related protein 4 (KRP4) / cyclin-d...    28   5.3  
At2g32710.1 68415.m04002 kip-related protein 4 (KRP4) / cyclin-d...    28   5.3  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    28   5.3  
At5g12870.1 68418.m01477 myb family transcription factor (MYB46)...    27   7.0  
At3g18640.1 68416.m02368 zinc finger protein-related contains si...    27   7.0  
At4g04920.1 68417.m00715 expressed protein                             27   9.2  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  135 bits (326), Expect = 2e-32
 Identities = 74/164 (45%), Positives = 92/164 (56%)
 Frame = +2

Query: 14  TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 193
           T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+R
Sbjct: 22  TDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSR 81

Query: 194 IPRVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYRSPSA 373
           IPRV GGGTHR+GQ AFGNM        P             +             +  A
Sbjct: 82  IPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPA 141

Query: 374 RSX*RTHY*KDSPSFPLVVADKVQEINKTKQAVIFLRRLKAWSD 505
               R H  ++ P  PLVV+D  + + KT  A+  L+++ A+ D
Sbjct: 142 LVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDD 185



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 35/110 (31%), Positives = 44/110 (40%)
 Frame = +1

Query: 256 RGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXQESQRSFXLEDTLLKRFPELPTGCSR 435
           RGGRMFAPTK WRRWH                               ++  PE+P   S 
Sbjct: 103 RGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSD 162

Query: 436 QSPGDQQDQTGCHLPEAPQGMV*YLKVYKSQRLRAGKGKMRNRRRIQRKG 585
            +   ++      + +         K   S  +R GKGKMRNRR I RKG
Sbjct: 163 SAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 212


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  135 bits (326), Expect = 2e-32
 Identities = 74/164 (45%), Positives = 93/164 (56%)
 Frame = +2

Query: 14  TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 193
           T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+R
Sbjct: 21  TDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSR 80

Query: 194 IPRVRGGGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYRSPSA 373
           IPRV GGGTHR+GQ AFGNM        P             +             +  A
Sbjct: 81  IPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPA 140

Query: 374 RSX*RTHY*KDSPSFPLVVADKVQEINKTKQAVIFLRRLKAWSD 505
               R H  ++ P  PLVV+D  + + KT  A+  L+++ A+ D
Sbjct: 141 LVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDD 184



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 35/110 (31%), Positives = 44/110 (40%)
 Frame = +1

Query: 256 RGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXQESQRSFXLEDTLLKRFPELPTGCSR 435
           RGGRMFAPTK WRRWH                               ++  PE+P   S 
Sbjct: 102 RGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSD 161

Query: 436 QSPGDQQDQTGCHLPEAPQGMV*YLKVYKSQRLRAGKGKMRNRRRIQRKG 585
            +   ++      + +         K   S  +R GKGKMRNRR I RKG
Sbjct: 162 SAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 211


>At2g10350.1 68415.m01087 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At1g44880, At3g42530, At4g19320,
           At5g36020, At4g03970, At3g43010 ; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1110

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 428 VADKVQEINKTKQAVIFLRRLKAWSDILRCTSLS 529
           ++++V ++ KTK+AV F R  K  S  + C+S S
Sbjct: 401 LSNRVMKLEKTKKAVRFKRSTKLSSSFVACSSRS 434


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 35  PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 130
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 35  PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 130
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 160 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 29
           +TG+  +L+ + VG+P+VL    ++ I Q+   DG +E +RE  G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243


>At2g32710.2 68415.m04003 kip-related protein 4 (KRP4) /
           cyclin-dependent kinase inhibitor 4 (ICK4) nearly
           identical to cyclin-dependent kinase inhibitor 4 (krp4)
           [Arabidopsis thaliana] GI:14422291
          Length = 286

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 212 GGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYRSPSARS 379
           GG    G G   ++ ++DV SP  S   +G +        +  +QRC  + PS+ S
Sbjct: 18  GGGGGGGGGGESSIALMDVVSPSSS-SSLGVLTRAKSLALQQQQQRCLLQKPSSPS 72


>At2g32710.1 68415.m04002 kip-related protein 4 (KRP4) /
           cyclin-dependent kinase inhibitor 4 (ICK4) nearly
           identical to cyclin-dependent kinase inhibitor 4 (krp4)
           [Arabidopsis thaliana] GI:14422291
          Length = 289

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 212 GGTHRSGQGAFGNMFVVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYRSPSARS 379
           GG    G G   ++ ++DV SP  S   +G +        +  +QRC  + PS+ S
Sbjct: 18  GGGGGGGGGGESSIALMDVVSPSSS-SSLGVLTRAKSLALQQQQQRCLLQKPSSPS 72


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 35  PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 130
           PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 367 PLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At5g12870.1 68418.m01477 myb family transcription factor (MYB46)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 280

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 434 RLQPVGSSGNLFNNVSSSXNERWDSCSSN 348
           RL+ +  + NL NN SSS N   DS S++
Sbjct: 121 RLKKMSDTSNLINNSSSSPNTASDSSSNS 149


>At3g18640.1 68416.m02368 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 676

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 270 VRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVXARGHIIEKIPRAS 419
           V+P++A          P    GLG S  A GVPA+  ++   +E+I   S
Sbjct: 488 VQPNQATTQSNVVSSNPNQLWGLGMSTGAEGVPAVTASKISNVEEIQEVS 537


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 53  KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE-SWGTGRAVARIPRVRGG 214
           K P   D  + + +S S  S     VS EA  Q++A  +WG+G         RGG
Sbjct: 403 KKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGG 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,034
Number of Sequences: 28952
Number of extensions: 276496
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)