Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00144
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    44   2e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    36   0.005
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    30   0.33 
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   0.58 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    29   1.0  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   4.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   5.4  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2

Query: 638 LSPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPFRPGI 507
           ++P  P +P  P +P  P APS+P  P  P +PE+P +P RP +
Sbjct: 582 VAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAV 625



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -2

Query: 638 LSPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPFRPGI 507
           ++P  P +P +P  P  P APS+P  P  P  PE+P +P RP +
Sbjct: 612 VAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 632 PFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPFRPGI 507
           P  P +P +P  P  P APS+P  P  P  PE+P +P  P +
Sbjct: 644 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAV 685



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 635 SPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPFRP 513
           S  +P +P  P +P  P APS+   P  P +PE+P  P RP
Sbjct: 508 SVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRP 548



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 632 PFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPFRP 513
           P +P +P +P  P  P A S+P  P  P +PE+P +P  P
Sbjct: 554 PEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPP 593


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 635 SPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPFRPGI 507
           +PF P  P  P  PG PGA + PG PG   + E   L   PG+
Sbjct: 537 APF-PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGV 578



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 511 PGLKGNL-GISGEPGRPGVPGIDGAPGQPG 597
           PG+     G    P  PG+PG    PG PG
Sbjct: 533 PGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 547 PGRPGVPGIDGAPGQPGDVGLPG 615
           PG P VP + G PG     G PG
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPG 562



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 635 SPFSP--VIPGKPTSPGWPGAPSIPGTPGRPGSPEM 534
           +PF P    P  PT+   PG P +P  PG PG P +
Sbjct: 483 APFIPGTSAPLPPTTFAPPGVP-LPPIPGAPGMPNL 517



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 556 PGVPGIDGAPGQPGDVGLPGITG 624
           PG P +   PG PG    PG  G
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPG 562



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 541 GEPGRPGVPGIDGAPGQPGDVG 606
           G P  P +PGI GA   PG  G
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPG 562


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 626 SPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPF 519
           +P++P  P  PG   A   P     PG+P MP +PF
Sbjct: 286 APLVP--PPPPGMVMASPSPAAATIPGAPVMPNIPF 319


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 638 LSPFSPVIPGKPTSPGWPGAPSIPGTPGR-PGSPEMPKLPFRPGILEDHDFLFLQWVPRV 462
           LS ++ VI    T+P  P + S+ G PG  PG   +P +  R  I       +    P  
Sbjct: 513 LSEYTSVIQASLTAPSQPASLSLLGPPGNTPGHRNVPPILKRSSIGTPSQQAYFPDAP-- 570

Query: 461 HQTHASP 441
           H  H+ P
Sbjct: 571 HNCHSVP 577


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = -1

Query: 258 PDNLCHQFDP-IDQVIPVVLEGL--QILDLL*VLEDRQDLDVQ 139
           PD LC    P +D+++P++L+G+    +DLL +  D  D DV+
Sbjct: 291 PD-LCSALGPYLDKIVPMLLQGMVYSDMDLLLLGNDADDYDVE 332


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 150 LDVQTGLENRVNLDTLILLYHPFLPV--SLVRPDDLEVQDVLENPENLFGHL 1
           +D+      ++N D + LLY PF  +  S ++P D    +  E  ++ +G L
Sbjct: 303 MDIHATFIQKLNYDLINLLYEPFHNIYSSFIKPIDDRRLEFDEQSKSFYGSL 354


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 530 KLPFRPGILEDHDFLFLQWVPRVHQTHASPFLLF 429
           KLP RP +L     L  Q +  +  T  SP+LLF
Sbjct: 116 KLPLRPTLLYGRMHLPSQHLDAIFATRLSPWLLF 149


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 481 SNGSRESIKPTHPHFSFL 428
           SN S  S KP+HP  SFL
Sbjct: 805 SNNSSNSFKPSHPSQSFL 822


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 124 PGKPGYPNSPLSPFSPCEP 68
           P     PN+P +PFSP  P
Sbjct: 269 PSMKDVPNNPFTPFSPINP 287


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 623  PVIPGKPTSPGWPG--APS-IPGTPGRPGSPEMPKLP 522
            P+   +PT+PG P   AP  +P  P    +P  PK P
Sbjct: 1427 PLKASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAP 1463


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 635 SPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLPFRPGI 507
           +P    IP  P +P   G P  P  PG  G+   P  P  P +
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,446
Number of Sequences: 5004
Number of extensions: 50347
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)