Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00143
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   3.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   8.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   8.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   8.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   8.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   8.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   8.1  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
 Frame = +2

Query: 104 WSTITTLSTTPSYSAKGL------RTFITFYPRCHPPLASPFRAFWPMIRLTPPLP-QHH 262
           WS      +TP+Y  +GL       T  +F     PP  +P  A +  + ++   P + H
Sbjct: 178 WSATPQAGSTPTYQTQGLLSPSYGGTTYSFTADFRPPQETPVLASYKSVPMSFSSPRRRH 237

Query: 263 S 265
           S
Sbjct: 238 S 238


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 106 VYHHNAKYDSK 138
           +Y+H A YDSK
Sbjct: 166 LYNHTANYDSK 176


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 109 YHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH-TTASATSLKVESDSL 285
           YH++  Y+S +        +Y  PQ+ S  G  I   +     H T     SL  +    
Sbjct: 64  YHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVT 123

Query: 286 SSISV 300
           SS ++
Sbjct: 124 SSSNI 128


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 109 YHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH-TTASATSLKVESDSL 285
           YH++  Y+S +        +Y  PQ+ S  G  I   +     H T     SL  +    
Sbjct: 64  YHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVT 123

Query: 286 SSISV 300
           SS ++
Sbjct: 124 SSSNI 128


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -3

Query: 220 ECPEWTCQWWMAPGVERNEGSQPFCGITW 134
           EC E T Q  +   V      + FC + W
Sbjct: 167 ECDEITIQAILEFSVTNPTIKEDFCAVLW 195


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 93 DIGTDE*VTAFYDHHSGED 37
          D+G+ + V  F D   GED
Sbjct: 11 DLGSTDEVKVFKDEGDGED 29


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 176 YPRCHPPLASPFRA 217
           +P   PPL SPF A
Sbjct: 196 FPGGAPPLVSPFLA 209


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 109 YHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH-TTASATSLKVESDSL 285
           YH++  Y+S +        +Y  PQ+ S  G  I   +     H T     SL  +    
Sbjct: 64  YHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVT 123

Query: 286 SSISV 300
           SS ++
Sbjct: 124 SSSNI 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,986
Number of Sequences: 336
Number of extensions: 1980
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)