Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00143
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0119 - 931934-932359,933409-933564                               28   3.3  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     28   3.3  
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909     27   4.3  
03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672...    27   4.3  
02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967...    27   4.3  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   5.7  
11_01_0024 + 163588-163897,164303-164406                               27   7.6  
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029...    27   7.6  

>11_01_0119 - 931934-932359,933409-933564
          Length = 193

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 224 PMIRLTPPLPQHHSRWNRIHFRQSPYEERTRKQ 322
           P++ LTP +   H +WN     +    +RTR Q
Sbjct: 45  PLLALTPQIISMHDQWNCYRASEEGQGKRTRSQ 77


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 115 HNAKYDSKLFRKRVENLHYVL 177
           HNAK+ ++++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
          Length = 627

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 176 YPRCHPPLASPFRAFWPMIRLTPPLPQHHSRWNRIHFRQSP 298
           YP   PP A+P   + P  R  PP PQ    ++ +   Q P
Sbjct: 26  YPHHPPPYAAPLPQYAPYARGMPP-PQAQQLYSHLPPHQQP 65


>03_03_0242 +
           15765726-15765965,15766703-15766874,15767056-15767209,
           15767287-15767350,15767533-15767640,15767817-15767942,
           15768037-15768269,15768565-15768787
          Length = 439

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 224 PMIRLTPPLPQHHSRWNRIHFRQSPYEERTRKQA*LRCL 340
           P  +L+PPL +H     +  FR+ P +E T  Q    CL
Sbjct: 309 PPEKLSPPLKKHGKGGIKALFRRRPSDELTEDQMDRGCL 347


>02_03_0285 -
           17296164-17296203,17296406-17296524,17296572-17296742,
           17298878-17298985,17299783-17299905,17300057-17300143,
           17300765-17300884
          Length = 255

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 145 RKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASATSLKVESDSLSSI 294
           RK VE L  V  ++PS    S+ GI+ Y   +    AT+L+ E  + + I
Sbjct: 113 RKDVEILLPVTSRIPSVYDWSVDGIITY--VNKNVQATNLEPEDGTCTRI 160


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 82  GTNINRPMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 240
           GT+ N+ ++       D     KR+ ++HY+   +PS     +  +   DK H
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNH 294


>11_01_0024 + 163588-163897,164303-164406
          Length = 137

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 239 TPPLPQHHSRWNR-IHFRQSPYEERTRKQA*LRCLHLRL 352
           TP  P HH RW+R  H       ER  K    R L LRL
Sbjct: 85  TPNAPTHHGRWSRQTHHPHEKDLERIEKSN--RVLLLRL 121


>01_03_0179 +
           13500413-13500768,13502522-13502642,13502876-13502998,
           13504409-13504497,13504612-13504696,13504852-13505011,
           13505096-13505160,13505296-13505349,13505437-13505527,
           13505685-13505986,13506084-13506365,13506451-13506764,
           13506920-13507080,13507202-13507305,13507379-13507535,
           13507652-13507896,13507995-13508327,13508428-13508751,
           13508816-13508899,13509001-13509169,13509610-13509731,
           13510538-13510792,13511115-13511252
          Length = 1377

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 IGKSIQGILAYDKTHTTASATSLKVESDSLSSISV*RANAETSLITMSTSTFKY 357
           +G+SIQ  L+     + +   SL      +S +++ +AN +  L+ M  ++F Y
Sbjct: 517 VGQSIQNELSEPFDRSRSHPASLATSKFGVSWMALLKANIDRELLLMKRNSFVY 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,584
Number of Sequences: 37544
Number of extensions: 209073
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)