Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00143
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    30   0.69 
At5g50290.1 68418.m06227 hypothetical protein                          28   2.8  
At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family...    27   6.4  
At4g30380.1 68417.m04316 expansin-related similar to blight-asso...    27   6.4  
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ...    27   6.4  
At2g32410.1 68415.m03960 auxin-resistance protein, putative stro...    27   6.4  
At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family prote...    27   6.4  
At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative ...    26   8.5  

>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 124 KYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 240
           K + KL+    +    ++P  P  IG  + GI AYD +H
Sbjct: 5   KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSH 43


>At5g50290.1 68418.m06227 hypothetical protein 
          Length = 335

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 241 CESYHRPECPEWTCQWWMAPGVERNEGSQPFCGI 140
           CE Y    CP W    +  PG+    G    CG+
Sbjct: 148 CEEYM--SCPAWDMVGYRQPGIHSGSGPPMCCGV 179


>At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 302

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 160 NLHYVLPQVPSTIGKSIQGILAYDKTHTTASATSLKVESDSLSSI 294
           +L+++LP  P  +  + Q    + +T +T S++S    S S SSI
Sbjct: 130 SLNFLLPNQPLGLNLNFQDFNDFIQTSSTTSSSSSSSTSSSSSSI 174


>At4g30380.1 68417.m04316 expansin-related similar to
           blight-associated protein p12 precursor [Citrus
           jambhiri] gi|4102727|gb|AAD03398; similar to
           beta-expansin [Oryza sativa] gi|8118428|gb|AAF72986;
           expansin-related gene, PMID:11641069,
           www.bio.psu.edu/expansins
          Length = 123

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  SIDLWSTITTLSTTPSYSAKGLRTFITFYPRCH 190
           SI  +ST+     + SY+  G+ TF T Y  C+
Sbjct: 4   SIVFFSTVLVFLFSFSYATPGIATFYTSYTPCY 36


>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
           identical to WIP2 protein [Arabidopsis thaliana]
           gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 383

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 191 PPLASPFRAFWPMIRLTPPLPQHHSRWNRIHFRQSP 298
           PP + P R   P++ L+P   Q     N  H  Q P
Sbjct: 60  PPPSPPLREALPLLSLSPANKQQDHHHNHDHLIQEP 95


>At2g32410.1 68415.m03960 auxin-resistance protein, putative strong
           similarity to SP|P42744 Auxin-resistance protein AXR1
           {Arabidopsis thaliana}; contains Pfam profile PF00899:
           ThiF family
          Length = 523

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  INRPMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGK 204
           IN   +YH  A+ D     +RV+++   + Q PS+I K
Sbjct: 328 INLQKIYHSKAEADFLSMEQRVKSILVKVGQDPSSISK 365


>At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 263

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 122 LSTTPSYSAKGLRTFITFYPRCHPPLASPFRAFWPMIRLTPP 247
           L+ T S+S +G  T    Y  C   +A P    W MI+  PP
Sbjct: 189 LAGTRSFSEEGYGTVTRIYIVCGEDMAVPEDYQWWMIKNFPP 230


>At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative
           (DFL-1) identical to auxin-responsive GH3 homologue
           [Arabidopsis thaliana] GI:11041726; similar to
           auxin-responsive GH3 product [Glycine max] GI:18591;
           contains Pfam profile PF03321: GH3 auxin-responsive
           promoter
          Length = 612

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 259 MLRKRWCESYHRPECPEWT 203
           +L  R  +SY  P+CP+W+
Sbjct: 585 LLNSRVVDSYFSPKCPKWS 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,238,101
Number of Sequences: 28952
Number of extensions: 163209
Number of successful extensions: 400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)