Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00142
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    27   3.3  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   5.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   5.8  

>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +3

Query: 456 LMHRRDTRKVRVKNFAE-----VFPLNSWIPKYSLKLVKPQLLFHQTFHAYLLSFHET 614
           L+H    R   V+ F E     VF +N W+  Y  + V+P ++    +    ++  E+
Sbjct: 491 LVHGEPERNDMVQYFGERMEGFVFTVNGWVQSYGSRCVRPPIIVGDVYRPAPMTVKES 548


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 258 EFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDL 386
           E+++   LP+D   SL++   Q+   +  G+L  V   +++++
Sbjct: 163 EYELECTLPRDVRESLYIHDGQDRGGQPTGILFGVTLLDIEEI 205


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 109  ITPKGENNSVFQLTEQFLTEDYANNGIE 192
            +TP     +++ L+E FLT++   NG+E
Sbjct: 949  MTPSNGLRNIYPLSETFLTKEAIANGLE 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,427
Number of Sequences: 5004
Number of extensions: 69223
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)