Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00142
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)                    31   1.5  
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)                   29   6.2  

>SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)
          Length = 585

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 568 YSTRRSTHTYYHSTRLHCDGLRRRTPPCVLARRYR-HQPASLSLAFGLPVYGQR 726
           YS++R  H      R H  G  ++   C++  R + H+PAS+    G   +G+R
Sbjct: 4   YSSKRMVHRTVTFFRDHLQGAAKKELTCIVFNRDKIHRPASVFDRVGFESFGRR 57


>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
          Length = 440

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 339 LLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKV 485
           LL +L  +PEN+          + V  NP+L  Y  +V L  ++  RK+
Sbjct: 384 LLAMLRTLPENQKSKCADMGRSSEVESNPKLPKYKATVRLQEQQSRRKI 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,049,801
Number of Sequences: 59808
Number of extensions: 501900
Number of successful extensions: 1337
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)