Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00142
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    29   4.1  
U41528-6|AAK39169.3|  424|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 360 VPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNF 500
           + EN L+  +  C +   NL    FN C  +A        K+++K +
Sbjct: 447 IAENHLKMFIQECGYRSYNLRAYTFNGCEPLAAFETEPHCKIQLKEY 493


>U41528-6|AAK39169.3|  424|Caenorhabditis elegans Hypothetical
           protein C15C7.6 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 432 FNYCYSVALMHRRDTRKVRVKNFAEVFPLNSWIPK 536
           FN  Y + +  R+  + +R K F E FP+ SW+ K
Sbjct: 56  FNITYMIEMTCRK--QNMRQKRFTEYFPVLSWLLK 88


>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 53  WLTFLKASSCCSIVQMSRSSHPRAKT---ILCFNSQN 154
           +L+FL  S+CCSI+     SH    T    LC NS N
Sbjct: 43  FLSFLSFSTCCSILGWFFLSHSTMHTYFSFLCTNSTN 79


>AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical
           protein Y52B11A.1 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 377 TRFAIDMRLCTSKPEPSVVQLLLL 448
           TRF I MR  TSK EP++ +LL L
Sbjct: 96  TRFIISMRDFTSKEEPTLSELLNL 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,190
Number of Sequences: 27780
Number of extensions: 382580
Number of successful extensions: 957
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)