Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00142
         (842 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family pr...    29   3.9  
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ...    29   5.1  
At3g23920.1 68416.m03005 beta-amylase, putative / 1,4-alpha-D-gl...    29   5.1  
At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein...    28   8.9  

>At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 736

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 568 NSCGFTSLSEYLGIQEFRGKTSAKFLTLTFLVSRLCISA 452
           ++C   SLSE L +++FR   S  F T  F V  L + A
Sbjct: 4   DNCNKKSLSEVLDVRQFRHTNSPVFSTAIFAVIMLLVVA 42


>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1934

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 674 INLH--HYHWHLVYPFTANDLSIV 739
           +NLH  HY WH  +P   N++ +V
Sbjct: 715 MNLHIGHYQWHEFFPHATNNIGVV 738


>At3g23920.1 68416.m03005 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase enzyme [Arabidopsis thaliana] GI:6065749,
           beta-amylase PCT-BMYI from [Solanum tuberosum]; contains
           Pfam profile PF01373: Glycosyl hydrolase family 14
          Length = 575

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 267 IATQLPKDAEFSLFLPKHQEMANE--LLGVLMDVPENELQDLLSTCAFARVNLNPQLF 434
           +A ++P   E +L  P++ + A+E  L    +++ +N   +    CAF  + +NP+LF
Sbjct: 468 LAAEVPLAGENAL--PRYDDYAHEQILKASALNLDQNNEGEPREMCAFTYLRMNPELF 523


>At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 441

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 438 YCYSVALMHRRDTRKVRVKNFAEVFPLNSWIPKYSLKLVKPQLLFHQTFHAYLLSFHETT 617
           YC+S+AL+       + ++N     P N W+   S  LV+P  +F ++    +L + E  
Sbjct: 63  YCFSLALLIWFFASFILIENLYG--PKNVWLGPSSSILVEPSSIFVKSIKVKVLDYSEPG 120

Query: 618 LR 623
           L+
Sbjct: 121 LQ 122


>At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 441

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 438 YCYSVALMHRRDTRKVRVKNFAEVFPLNSWIPKYSLKLVKPQLLFHQTFHAYLLSFHETT 617
           YC+S+AL+       + ++N     P N W+   S  LV+P  +F ++    +L + E  
Sbjct: 63  YCFSLALLIWFFASFILIENLYG--PKNVWLGPSSSILVEPSSIFVKSIKVKVLDYSEPG 120

Query: 618 LR 623
           L+
Sbjct: 121 LQ 122


>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 281

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 231 TPQEPQQTPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDL 386
           T Q P+     K+++Q PKD   S  L  H  +   LLG+++ +  NEL+ +
Sbjct: 235 TYQSPKVKKVLKVSSQRPKD---SFMLIPHSLLCGPLLGMMLCI--NELKQM 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,357,275
Number of Sequences: 28952
Number of extensions: 353156
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)