Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00141
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    27   0.99 
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   3.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   5.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    24   7.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   7.0  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    24   7.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   9.3  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    24   9.3  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 212 NLILNYPAIIKVPGIR*WEIVENHSATMICN 304
           NL +N   + +   IR W ++ NH+ T I N
Sbjct: 583 NLTVNDSVVCEYDEIRRWHLMNNHTVTHILN 613


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 112 GNIKVCDDCLCIPTQSKE-LNCDKSGC-ICV 198
           GN+    D + +P + +E LNC +SGC ICV
Sbjct: 43  GNVSRIYDGIRVPPKPEEPLNCCQSGCAICV 73


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 94  LCSDDKGNIKVCDDCLC 144
           LC  +  NI+ C +CLC
Sbjct: 344 LCWGEANNIRFCPECLC 360


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -3

Query: 298  DHGSTMVFDNFPSSDTRYLYDRWIIKNKIFLQSVHK 191
            D G+ +  D +  S    +YDRW+ +  +     H+
Sbjct: 2092 DMGTLVFSDGWSCSSCNLVYDRWVFEETLVDNLYHQ 2127


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -3

Query: 94  GKYKVFLQS---VYTDIPVYHICHFHHIC 17
           GKY VF  S    +  + +   CHFH +C
Sbjct: 281 GKYDVFGSSHQWFHVCVIIAAFCHFHGVC 309


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 125 YAMIAYVSLLSLKN*TVTNLVAFVYRLKKNLILNYPAI 238
           Y+M+   S LSL N  ++N++ F Y   K L+++  A+
Sbjct: 89  YSMMTPSSCLSLLNPLLSNIIPF-YGASKPLVVHVAAL 125


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 121 LYYLCHRYTGKYKVFLQSV 65
           LYYL  RY GK  VF   +
Sbjct: 381 LYYLIMRYPGKTMVFANGI 399


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 363 LDKKYCLLNKIYDDRTK*PKLQIMVALWFSTISHHLI 253
           LD+K   +NK   ++ K PKL +  +  +  I H L+
Sbjct: 307 LDQKLLSINKPQQEKLKFPKLLLTNSSDYVRIFHELV 343


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 67  PTEGKLCICLCSDDKG 114
           P EGK  +  CS DKG
Sbjct: 91  PEEGKTLMVACSSDKG 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,941
Number of Sequences: 5004
Number of extensions: 33157
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)