Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00141
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 36 0.014
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 31 0.23
03_05_1036 + 29875585-29875648,29875742-29875956 28 2.2
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 27 3.8
10_01_0208 - 2228234-2228254,2228494-2228709,2228796-2228946,222... 27 5.0
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 5.0
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117 27 6.6
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482... 27 6.6
02_03_0316 - 17641559-17641798,17641874-17641972 27 6.6
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 26 8.7
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 35.5 bits (78), Expect = 0.014
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 4 RCDDC-KCDENGKCDKPECLCIPTEGKLCICLCSDDKGNIKVCDDCL 141
+C+D +C E C PEC C T G C CS D IK D C+
Sbjct: 516 KCEDINECKEKKACQCPECSCRDTWGDY-ECTCSGDLLYIKEHDTCI 561
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 31.5 bits (68), Expect = 0.23
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 40 CDKPECLCIPTEGKLCICLCSDDKGNIKVCDDCLCIPTQSKELNCDKS 183
C C+ + G C C + D GN + DDC + + NC +S
Sbjct: 257 CGSNNCIDVANGGYSCACPGNSDDGNPYLLDDCKQEFNPTPKKNCSRS 304
>03_05_1036 + 29875585-29875648,29875742-29875956
Length = 92
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 16 CKCDENGKCDKPECLCIPTEGKLCI 90
CK K D CLC PT+G+ C+
Sbjct: 53 CKNYPGKKLDGCVCLCAPTDGERCV 77
>08_02_0200 - 14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 77 ENFVFACVAMTKVI*RYAMIAYVSLLSLKN*TVTNLVAFVYRLKKNLILNYPAIIKVPGI 256
E F++ + I RY+ +A V L+SL + + F L+ N P ++ V G
Sbjct: 848 EKFLYTMFKLNSTILRYSRMAAVVLVSLPPPPLNHPAYFYMEYMDLLVENVPRMLIVRGY 907
Query: 257 R 259
R
Sbjct: 908 R 908
>10_01_0208 -
2228234-2228254,2228494-2228709,2228796-2228946,
2229031-2229268,2229394-2229604,2229765-2229943,
2230041-2230151,2230445-2231240
Length = 640
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +1
Query: 88 ICLCSDDKGNIKVCDDCLCIPTQSKELNC--DKSGCI 192
+ LC D N C DC+ Q C DKS I
Sbjct: 72 LALCRGDVANATACGDCVAASFQDARRTCPSDKSATI 108
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 13 DCKCDENGKCDKPECLCIPT-EGKLCICLCSDDKGNIKVC 129
DC C ENG C + C C + + + C C+ + + C
Sbjct: 463 DCACVENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQC 502
>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
Length = 193
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 71 VGIHRHSGLSHLPFS-SHLQSSQR 3
+GIHR +GLSHL F H+ +R
Sbjct: 149 LGIHRRTGLSHLMFEIYHVMKPKR 172
>04_03_0972 +
21347212-21347284,21347966-21348009,21348153-21348237,
21348810-21349358,21350291-21350416,21350772-21350936,
21351243-21351310,21351529-21351618,21351740-21351830,
21352214-21352812
Length = 629
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 79 KLCICLCSDDKGNIKVCDDCLCIPTQSKELNCDKSGCICVPTE 207
+L +CSD+ G+ K C I S + + +G + VP E
Sbjct: 79 ELMASVCSDENGHSKCCRYINAIIAVSSAMYANTTGILGVPAE 121
>02_03_0316 - 17641559-17641798,17641874-17641972
Length = 112
Score = 26.6 bits (56), Expect = 6.6
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +1
Query: 22 CDENGKCDKPECLCIPTEGKLCICLCSDDKGNI-----KVCDDCLCIPTQSKELNCDKSG 186
CD++G C C C G L D I KV DDC+ +K+ + +SG
Sbjct: 4 CDDDGGCSW--CWCPRDGGDLARSGAGSDHDQIRTTATKVLDDCIIGKVATKQASTQRSG 61
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 1 VRCDDC-KCDENGKCDKPECLCIPTEGKLCICLCSDDKGNIKVCDDCL 141
+ C+D +C E C P C C T G ++ IK D C+
Sbjct: 514 LHCEDVDECSEKLACSCPHCSCKNTWGSFDCSCHGNNLMYIKAEDTCI 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,327,323
Number of Sequences: 37544
Number of extensions: 187301
Number of successful extensions: 461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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