Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00140
(568 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52657 Cluster: Transcription initiation factor IIA gam... 90 3e-17
UniRef50_UPI0000E4A8EC Cluster: PREDICTED: similar to putative T... 71 2e-11
UniRef50_Q9NEX2 Cluster: Probable transcription initiation facto... 65 9e-10
UniRef50_A2XZI2 Cluster: Transcription initiation factor IIA gam... 64 3e-09
UniRef50_Q9BIB4 Cluster: Transcription initiation factor IIA sma... 62 7e-09
UniRef50_Q2UD99 Cluster: Transcription initiation factor IIA; n=... 62 9e-09
UniRef50_Q9W5B9 Cluster: Transcription initiation factor IIA gam... 62 9e-09
UniRef50_Q1EMR2 Cluster: Transcription initiation factor; n=12; ... 61 2e-08
UniRef50_O74948 Cluster: Probable transcription initiation facto... 58 2e-07
UniRef50_Q4P891 Cluster: Putative uncharacterized protein; n=1; ... 56 8e-07
UniRef50_Q01FA7 Cluster: Transcription factor IIA small subunit;... 54 3e-06
UniRef50_P32774 Cluster: Transcription initiation factor IIA sma... 51 2e-05
UniRef50_Q5KEI0 Cluster: Transcription initiation factor iia sma... 49 9e-05
UniRef50_Q6C0S4 Cluster: Similar to wi|NCU09748.1 Neurospora cra... 48 2e-04
UniRef50_A2DCB5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q483G1 Cluster: Pyruvate ferredoxin/flavodoxin oxidored... 34 2.0
UniRef50_Q9XG36 Cluster: Transcription initiation factor IIA gam... 34 2.0
UniRef50_Q500A4 Cluster: Putative uncharacterized protein; n=7; ... 34 2.7
UniRef50_Q7R8Q8 Cluster: Putative uncharacterized protein PY0716... 34 2.7
UniRef50_O86287 Cluster: Putative uncharacterized protein orfC; ... 33 6.2
UniRef50_UPI00015B62A6 Cluster: PREDICTED: similar to synaptic v... 32 8.1
UniRef50_UPI00006CB9E5 Cluster: hypothetical protein TTHERM_0055... 32 8.1
UniRef50_Q9Y7L5 Cluster: Uncharacterized protein C685.03 precurs... 32 8.1
>UniRef50_P52657 Cluster: Transcription initiation factor IIA gamma
chain; n=29; Eumetazoa|Rep: Transcription initiation
factor IIA gamma chain - Homo sapiens (Human)
Length = 109
Score = 90.2 bits (214), Expect = 3e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53 RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
Score = 84.2 bits (199), Expect = 2e-15
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = +1
Query: 97 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52
>UniRef50_UPI0000E4A8EC Cluster: PREDICTED: similar to putative
TFIIA gamma chain, partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to putative TFIIA
gamma chain, partial - Strongylocentrotus purpuratus
Length = 84
Score = 70.9 bits (166), Expect = 2e-11
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 401
K++++FK G LNTYRFCDNVWTF+LNDV+FR + V+KVKIVA DGK
Sbjct: 29 KNKISFK-GHLNTYRFCDNVWTFVLNDVDFRN-GDFVTVDKVKIVAVDGK 76
Score = 37.5 bits (83), Expect = 0.22
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 178 ITPALAVKVLLQFDKSINQALSNRV 252
ITP LA+ VLL+FD++IN AL+NR+
Sbjct: 4 ITPQLALNVLLKFDRAINDALANRL 28
>UniRef50_Q9NEX2 Cluster: Probable transcription initiation factor
IIA gamma chain; n=2; Caenorhabditis|Rep: Probable
transcription initiation factor IIA gamma chain -
Caenorhabditis elegans
Length = 113
Score = 65.3 bits (152), Expect = 9e-10
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +3
Query: 249 SKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 401
+K+++ F+A KL YR+CDNVWTF++ ++ R+ E V+++KIVACDG+
Sbjct: 55 AKNKVNFRADKLRAYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQ 105
Score = 52.8 bits (121), Expect = 5e-06
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +1
Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNR 249
+YQLYRNTT+G LQ++LD+ + I +L+ K++ FDKSIN+ L ++
Sbjct: 5 NYQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHK 54
>UniRef50_A2XZI2 Cluster: Transcription initiation factor IIA gamma
chain; n=4; Eukaryota|Rep: Transcription initiation
factor IIA gamma chain - Oryza sativa subsp. indica
(Rice)
Length = 106
Score = 63.7 bits (148), Expect = 3e-09
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 401
KS+++ K G L+TYRFCDNVWTF+L + F+ + +V KVKIVACD K
Sbjct: 54 KSKVSIK-GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK 102
Score = 62.5 bits (145), Expect = 7e-09
Identities = 26/51 (50%), Positives = 41/51 (80%)
Frame = +1
Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
+++LYR +TIG L E+LDE++ G ++P LA++VL+QFDKS+ +AL N+V
Sbjct: 3 TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQV 53
>UniRef50_Q9BIB4 Cluster: Transcription initiation factor IIA small
chain homolog; n=2; Caenorhabditis|Rep: Transcription
initiation factor IIA small chain homolog -
Caenorhabditis elegans
Length = 139
Score = 62.5 bits (145), Expect = 7e-09
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Frame = +3
Query: 189 TSSKSFAAIRQIYKSSSVQ*S---KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQEL 359
T S + ++Q KS + Q S K ++ F A +L TYR+CDNVWTF+LN+V ++ Q
Sbjct: 30 TKSLASKVLQQFDKSMNKQISRLPKEKMNFCATQLLTYRYCDNVWTFILNNVTLKDPQRS 89
Query: 360 --AKVEKVKIVACDGK 401
++K+K+VACDG+
Sbjct: 90 FDEPIDKLKVVACDGR 105
Score = 53.2 bits (122), Expect = 4e-06
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1
Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALS 243
SY LYR TT+G L ++L+++ G +T +LA KVL QFDKS+N+ +S
Sbjct: 3 SYALYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQIS 50
>UniRef50_Q2UD99 Cluster: Transcription initiation factor IIA; n=17;
Ascomycota|Rep: Transcription initiation factor IIA -
Aspergillus oryzae
Length = 112
Score = 62.1 bits (144), Expect = 9e-09
Identities = 28/51 (54%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFR-EVQELAKVEKVKIVACDGK 401
++RLTFK G L+TYRFCD VWTF++ DV F+ + Q + +KVKIV+C+ K
Sbjct: 58 RARLTFK-GHLDTYRFCDEVWTFLIKDVTFKLDNQTTVQADKVKIVSCNSK 107
Score = 52.4 bits (120), Expect = 7e-06
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = +1
Query: 103 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
Y+LYR +++G +L ++LD+LI G+I P LA+K+L FD+ I + L+++V
Sbjct: 8 YELYRGSSLGLSLTDTLDDLINDGRIEPQLAMKILSTFDRVITEVLADKV 57
>UniRef50_Q9W5B9 Cluster: Transcription initiation factor IIA
gamma-2 chain; n=12; Eukaryota|Rep: Transcription
initiation factor IIA gamma-2 chain - Drosophila
melanogaster (Fruit fly)
Length = 107
Score = 62.1 bits (144), Expect = 9e-09
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +3
Query: 255 SRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDG 398
S ++F A +L T+R CDNVWT +L D EFRE Q KV+ VKIVAC G
Sbjct: 54 SNMSFTAERLETFRCCDNVWTLILKDAEFREDQHSLKVDVVKIVACLG 101
Score = 58.8 bits (136), Expect = 8e-08
Identities = 27/50 (54%), Positives = 39/50 (78%)
Frame = +1
Query: 97 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSN 246
M+YQ YR TT+G TLQ++LDE+++ G IT +A VLL++DKSI+ AL +
Sbjct: 1 MNYQHYRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKD 50
>UniRef50_Q1EMR2 Cluster: Transcription initiation factor; n=12;
Magnoliophyta|Rep: Transcription initiation factor -
Plantago major (Common plantain)
Length = 114
Score = 60.9 bits (141), Expect = 2e-08
Identities = 25/54 (46%), Positives = 42/54 (77%)
Frame = +1
Query: 91 TVMSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
T+ +++LYR +TIG L E+LD+++ G ++P LA++VL+QFDKS+ +AL + V
Sbjct: 8 TMATFELYRRSTIGMCLTETLDQMVSSGVLSPELAIQVLIQFDKSMTEALESEV 61
Score = 59.3 bits (137), Expect = 6e-08
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 401
KS+++ K G L+TYRFCDNVWTF++ + + + + VE VKIVACD K
Sbjct: 62 KSKVSIK-GHLHTYRFCDNVWTFIVQNAQLKSEEGQETVETVKIVACDSK 110
>UniRef50_O74948 Cluster: Probable transcription initiation factor
IIA small chain; n=2; Ascomycota|Rep: Probable
transcription initiation factor IIA small chain -
Schizosaccharomyces pombe (Fission yeast)
Length = 107
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVAC 392
+SRLTFK G L+TYRFCD VWTF++ + FR E K++IVAC
Sbjct: 53 RSRLTFK-GHLDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVAC 98
Score = 52.8 bits (121), Expect = 5e-06
Identities = 25/50 (50%), Positives = 38/50 (76%)
Frame = +1
Query: 103 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
Y+LYR + I +L ++LD+LI G+I+P LA+KVL FDKS+ +AL+ +V
Sbjct: 5 YELYRRSRI--SLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKV 52
>UniRef50_Q4P891 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 155
Score = 55.6 bits (128), Expect = 8e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +1
Query: 103 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVNLG*PLK 273
Y+LYR ++IG L ++LDELIQ G I P LA++VL +FDK+I L+ V LK
Sbjct: 12 YELYRRSSIGMQLTDALDELIQSGHINPVLAMRVLNEFDKAIATNLAKNVKAKSQLK 68
Score = 42.3 bits (95), Expect = 0.008
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 249 SKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFR-EVQELAKVEKVKIVAC 392
S S G L YR C+ VWTF + + + + E+ V+KVKIVAC
Sbjct: 99 STSLFALDQGHLKDYRLCEEVWTFRVRNATLKLDNAEILDVDKVKIVAC 147
>UniRef50_Q01FA7 Cluster: Transcription factor IIA small subunit;
n=2; Ostreococcus|Rep: Transcription factor IIA small
subunit - Ostreococcus tauri
Length = 113
Score = 53.6 bits (123), Expect = 3e-06
Identities = 21/48 (43%), Positives = 37/48 (77%)
Frame = +1
Query: 97 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQAL 240
MS +LYR +TIG +L ++LDE++ G ++P++A+KVL +FD+ + + L
Sbjct: 1 MSLELYRRSTIGMSLTDALDEMVNSGVLSPSIAMKVLFEFDRCVTRVL 48
Score = 50.8 bits (116), Expect = 2e-05
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Frame = +3
Query: 240 VQ*SKSRLTFKAGKLNTYRFCDNVWTFMLND-----VEFREVQELAKVEKVKIVACDGK 401
+Q SK++ + K G+L+TYRFC NVWTF++ D + ++V+ +K+VACDGK
Sbjct: 48 LQASKTKASIK-GQLHTYRFCGNVWTFIVEDAVVNVTDTDSTSRESRVKLLKVVACDGK 105
>UniRef50_P32774 Cluster: Transcription initiation factor IIA small
subunit; n=10; Saccharomycetales|Rep: Transcription
initiation factor IIA small subunit - Saccharomyces
cerevisiae (Baker's yeast)
Length = 122
Score = 50.8 bits (116), Expect = 2e-05
Identities = 28/66 (42%), Positives = 41/66 (62%)
Frame = +1
Query: 103 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVNLG*PLKQEN 282
Y+LYR +TIGN+L ++LD LI G+I +LA++VL FDK + + L + +K N
Sbjct: 7 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GN 65
Query: 283 LTHTGF 300
L GF
Sbjct: 66 LDTYGF 71
Score = 40.3 bits (90), Expect = 0.031
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 14/65 (21%)
Frame = +3
Query: 249 SKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFR--------------EVQELAKVEKVKIV 386
++S+LT K G L+TY FCD+VWTF++ + + + Q + V+K++IV
Sbjct: 56 TQSKLTVK-GNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIV 114
Query: 387 ACDGK 401
AC+ K
Sbjct: 115 ACNSK 119
>UniRef50_Q5KEI0 Cluster: Transcription initiation factor iia small
chain, putative; n=1; Filobasidiella neoformans|Rep:
Transcription initiation factor iia small chain,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 127
Score = 48.8 bits (111), Expect = 9e-05
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +1
Query: 103 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
Y+ R+ IG L ++LDELI G I P LA++VL QFDKS+ + L V
Sbjct: 11 YRGSRHVHIGTALTDALDELITQGDIPPQLAMRVLQQFDKSLTECLQKGV 60
Score = 47.2 bits (107), Expect = 3e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFR-----EVQELAKVEKVKIVACDGKNVDD 413
K++ T K G L+TYR CD+VWTF++ D +F+ E+ K+KIVAC + D
Sbjct: 61 KNKTTIK-GHLSTYRLCDDVWTFVVKDPQFKMEGVGAGSEMVTGSKIKIVACKSGDAAD 118
>UniRef50_Q6C0S4 Cluster: Similar to wi|NCU09748.1 Neurospora crassa
NCU09748. 1 hypothetical protein; n=1; Yarrowia
lipolytica|Rep: Similar to wi|NCU09748.1 Neurospora
crassa NCU09748. 1 hypothetical protein - Yarrowia
lipolytica (Candida lipolytica)
Length = 111
Score = 47.6 bits (108), Expect = 2e-04
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1
Query: 103 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVNLG*PLKQEN 282
Y +YR ++IG L E+LDELI+ I P LA+KV+ FD+ + L N V K E
Sbjct: 7 YNIYRVSSIGTALTEALDELIRDSTIPPQLALKVVEVFDRVMADTLRNDVRNRMSFKGEL 66
Query: 283 LTHTG 297
T+ G
Sbjct: 67 HTYRG 71
Score = 47.2 bits (107), Expect = 3e-04
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +3
Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFR-EVQELAKVEKVKIVACDGKNVDD 413
++R++FK G+L+TYR ++VWTF++ V F+ + ++ +K+KIV C+ + D
Sbjct: 57 RNRMSFK-GELHTYRGLEDVWTFIIRRVVFKMDNNDVVNADKIKIVTCNARKAGD 110
>UniRef50_A2DCB5 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 378
Score = 34.7 bits (76), Expect = 1.5
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = -3
Query: 509 MTKNYNNINEIQSFSVRSLIKPSKLISYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFNI 330
+TK Y N ++ F + S IK KL +Y N F+ F+ F L F+ KF +
Sbjct: 164 LTKYYKNFQDVFLFQINSSIKDPKLTAYTSKYCQNTFS----GFS-FRLESFINKYKFGV 218
Query: 329 IQHKSPY 309
+ SPY
Sbjct: 219 LHPYSPY 225
>UniRef50_Q483G1 Cluster: Pyruvate ferredoxin/flavodoxin
oxidoreductase; n=1; Colwellia psychrerythraea 34H|Rep:
Pyruvate ferredoxin/flavodoxin oxidoreductase -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 1157
Score = 34.3 bits (75), Expect = 2.0
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -3
Query: 287 VKFSCFKG*PRFTLLDRA*FIDLSNCSKTFTASAGVICPYWIS 159
VK SC P T L R ID SNC+K FT + G CP +++
Sbjct: 641 VKSSCISILPNETELGRKRKIDQSNCNKDFTCTEG-FCPSFVT 682
>UniRef50_Q9XG36 Cluster: Transcription initiation factor IIA gamma
chain; n=1; Guillardia theta|Rep: Transcription
initiation factor IIA gamma chain - Guillardia theta
(Cryptomonas phi)
Length = 128
Score = 34.3 bits (75), Expect = 2.0
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 276 GKLNTYRFCDNVWTFMLNDVEFREVQELAKV---EKVKIVACDGKN 404
GKL Y+ CDNVW F + + E + + + +KIVA D KN
Sbjct: 60 GKLLHYQNCDNVWMFFVTNPEIKNNNYSLPINLKKPLKIVAYDNKN 105
>UniRef50_Q500A4 Cluster: Putative uncharacterized protein; n=7;
Pseudomonas syringae group|Rep: Putative uncharacterized
protein - Pseudomonas syringae pv. syringae (strain
B728a)
Length = 247
Score = 33.9 bits (74), Expect = 2.7
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -3
Query: 509 MTKNYNNINEIQSFSVRSLIKPSKLISYRLSAVVNIF 399
+TK Y N EI S+S++++ +PSK I + A+++I+
Sbjct: 26 ITKQYPNGKEILSWSIKTIARPSKEIFFAEMAIISIY 62
>UniRef50_Q7R8Q8 Cluster: Putative uncharacterized protein PY07162;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY07162 - Plasmodium yoelii yoelii
Length = 1473
Score = 33.9 bits (74), Expect = 2.7
Identities = 29/86 (33%), Positives = 41/86 (47%)
Frame = -3
Query: 524 LDPKYMTKNYNNINEIQSFSVRSLIKPSKLISYRLSAVVNIFTITCYYFNFFHLGQFLYF 345
+D K +NI+E +S IK L LS V I+T YF F H Q Y
Sbjct: 527 IDTKIHATLIDNIDE-NKYSNDKKIKYINLSD--LSKKVQIYTNGILYFEFMHNKQMDYI 583
Query: 344 SKFNIIQHKSPYIITKPVCVKFSCFK 267
K+NI++ K II++ + KF+ K
Sbjct: 584 KKWNILKLKKE-IISEIINKKFNINK 608
>UniRef50_O86287 Cluster: Putative uncharacterized protein orfC;
n=1; Lactococcus lactis|Rep: Putative uncharacterized
protein orfC - Lactococcus lactis
Length = 239
Score = 32.7 bits (71), Expect = 6.2
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 249 SKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKNVDD 413
SK L+F+ K+N YR ++ + ++ F EV+ K+EK+++ A N+D+
Sbjct: 137 SKVLLSFEGNKINCYRIGGEEFSLVFEEINFVEVEN--KLEKIRL-AVQKINIDE 188
>UniRef50_UPI00015B62A6 Cluster: PREDICTED: similar to synaptic
vesicle protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to synaptic vesicle protein - Nasonia
vitripennis
Length = 470
Score = 32.3 bits (70), Expect = 8.1
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -3
Query: 449 KPSKLISYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFNIIQHKSPYIITKPVCVKFSCF 270
KP Y + ++N+ ++ + +F+ L F + S F + PY C +F C
Sbjct: 110 KPIVFYGYLIDGILNV--LSGFSQSFYVLAIFKFLSGFVV---SGPYASVMTYCAEFHCT 164
Query: 269 KG*PRFTLL 243
K P+ T+L
Sbjct: 165 KDRPKITML 173
>UniRef50_UPI00006CB9E5 Cluster: hypothetical protein
TTHERM_00557770; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00557770 - Tetrahymena
thermophila SB210
Length = 74
Score = 32.3 bits (70), Expect = 8.1
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -3
Query: 518 PKYMTKNYNNINEIQSFSVRSLIKPSKLISYRLSAVVNIFTITCYYFNFFHL 363
P+ +NY IN +SFS + + S +S + S+V ++F C++ F ++
Sbjct: 2 PQIKIQNYTCINLQESFSGEASFQISTSVSMKSSSVCSLFLTICFFKTFEYI 53
>UniRef50_Q9Y7L5 Cluster: Uncharacterized protein C685.03 precursor;
n=1; Schizosaccharomyces pombe|Rep: Uncharacterized
protein C685.03 precursor - Schizosaccharomyces pombe
(Fission yeast)
Length = 452
Score = 32.3 bits (70), Expect = 8.1
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 81 CNLNSDVISIIQKYHYW*YTSRKPRRADPIWTNNTSTSSKSFAAIRQIYKSSS 239
C++NS +S Y YW TS + ++TN TS+S+ + ++I Y S+S
Sbjct: 340 CSINSASMSSNTTYFYWNSTS---SLSSSVFTNTTSSSNSTNSSIPTTYPSNS 389
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,861,545
Number of Sequences: 1657284
Number of extensions: 7940988
Number of successful extensions: 21422
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21403
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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