Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00140
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.11c |||transcription factor TFIIA complex small subunit ...    58   1e-09
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.051
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.4  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   4.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   5.9  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.9  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    25   5.9  

>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 26/47 (55%), Positives = 33/47 (70%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVAC 392
           +SRLTFK G L+TYRFCD VWTF++ +  FR   E     K++IVAC
Sbjct: 53  RSRLTFK-GHLDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVAC 98



 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 25/50 (50%), Positives = 38/50 (76%)
 Frame = +1

Query: 103 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           Y+LYR + I  +L ++LD+LI  G+I+P LA+KVL  FDKS+ +AL+ +V
Sbjct: 5   YELYRRSRI--SLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKV 52


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +3

Query: 81  CNLNSDVISIIQKYHYW*YTSRKPRRADPIWTNNTSTSSKSFAAIRQIYKSSS 239
           C++NS  +S    Y YW  TS     +  ++TN TS+S+ + ++I   Y S+S
Sbjct: 340 CSINSASMSSNTTYFYWNSTS---SLSSSVFTNTTSSSNSTNSSIPTTYPSNS 389


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 452  IKPSKLISYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFNIIQHKSPYII 303
            IK S +      AVVN  T T   + F HLG+  YFS  + I+  + + +
Sbjct: 3052 IKGSSIYDAVAQAVVN--THTSIVWEFKHLGKTSYFSCLHFIRFLNTFCL 3099


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 404 IFTITCYYFNFFHLGQFLYFSKFNIIQHKSPYIITKPVCVKFSCF 270
           I TI  Y  + FHL  F  F + N +     +I  KPV V    F
Sbjct: 344 INTIIDYGMSLFHLFLFAAFIRNNSLYTSFNFITEKPVIVGLLLF 388


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 421  YLRSSTFLPSHATILTFSTLANSCTSRNSTSFNIK-VHTLSQNLY 290
            + R  + L      +  S L   C S N+TSF+++ V +L + LY
Sbjct: 1233 FQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKSLKETLY 1277


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -3

Query: 407 NIFTITCYYFNFFHLGQFLYFSKFNIIQHKSP 312
           ++F ++C  ++F  +    YF++F ++++ SP
Sbjct: 3   HLFILSCSVYDFSSILLHQYFTQFFVLRYASP 34


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
 Frame = -3

Query: 443 SKLISYRLSAVVNIFT------ITCYYFNF------FHLGQFLYFSKFNIIQHKSPYIIT 300
           SKLI+ + + ++  F       ITC  F        F++    +F K+ I ++K+P  +T
Sbjct: 7   SKLINLQFNIILTFFVYEWNHDITCLNFKVKKRRGDFYVINERFFIKYIIKKNKNPQNLT 66

Query: 299 KPVC 288
           K +C
Sbjct: 67  KSIC 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,281
Number of Sequences: 5004
Number of extensions: 38072
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)