Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00140
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0332 + 42811828-42811956,42812043-42812093,42812995-42813144     64   6e-11
05_01_0056 + 406039-406167,406262-406312,406474-406479                 62   2e-10

>01_07_0332 + 42811828-42811956,42812043-42812093,42812995-42813144
          Length = 109

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 29/55 (52%), Positives = 39/55 (70%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKNVDDR 416
           KS++T K G L+TYRFCDNVWTF+L D  F+  +    + KVKIVACD K ++ +
Sbjct: 54  KSKVTVK-GHLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLLETK 107



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 23/51 (45%), Positives = 40/51 (78%)
 Frame = +1

Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           +++LYR +TIG  L ++LD+++  G ++P LA++VL+QFDKS+  AL ++V
Sbjct: 3   TFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQV 53


>05_01_0056 + 406039-406167,406262-406312,406474-406479
          Length = 61

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/51 (50%), Positives = 41/51 (80%)
 Frame = +1

Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           +++LYR +TIG  L E+LDE++  G ++P LA++VL+QFDKS+ +AL N+V
Sbjct: 3   TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQV 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,183,009
Number of Sequences: 37544
Number of extensions: 185592
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)