Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00140
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19752| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   2e-14
SB_50559| Best HMM Match : PKD (HMM E-Value=1.9e-06)                   33   0.22 
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     31   0.66 

>SB_19752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = +3

Query: 201 SFAAIRQIYKSSSVQ*SKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVK 380
           S+   R     +S+Q S   L    G LNTYRFCDNVWTF+L +V+FR+V ++ KV+KVK
Sbjct: 127 SYQLYRNTTLGNSLQESLDELI--QGHLNTYRFCDNVWTFVLENVDFRDVGDVVKVDKVK 184

Query: 381 IVACDGK 401
           +VACDGK
Sbjct: 185 VVACDGK 191



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQ 168
           MSYQLYRNTT+GN+LQESLDELIQ
Sbjct: 126 MSYQLYRNTTLGNSLQESLDELIQ 149


>SB_50559| Best HMM Match : PKD (HMM E-Value=1.9e-06)
          Length = 367

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -3

Query: 524 LDPKYMTKNYNNINEIQSFSVRSLIKPSKLISYRLSAVVNIFTITCYYFNFFHLGQFLYF 345
           LDP Y T      N + S +V +L    K  S  LSA  ++  +TC  +N    G  ++ 
Sbjct: 45  LDPGYFTITVVCFNNVSSLTVNTLGHVHKRTSLYLSAGPSLTNLTCTQYNRTLSGHCIFS 104

Query: 344 SKFNII 327
           ++  +I
Sbjct: 105 NEMEVI 110


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 418 LRSSTFLPSHATILTFSTLANSCTSRNSTSFNIKVHTLSQNLYVLSFPALKVSL 257
           L+++TF PS     + STL  S    +ST  N+ + TL  N   ++ PA   SL
Sbjct: 461 LKNTTFTPSEIVSPSISTLHTSTVELSSTG-NVSMLTLKTNSIPVTSPAPSTSL 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,626
Number of Sequences: 59808
Number of extensions: 245126
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)