Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00140
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81713-1|CAA57357.1|  109|Homo sapiens smallest subunit of TFIIA...    90   4e-18
U21242-1|AAB58247.1|  109|Homo sapiens transcription factor TFII...    90   4e-18
U14193-1|AAA64951.1|  109|Homo sapiens transcription factor IIA ...    90   4e-18
CR542192-1|CAG46989.1|  109|Homo sapiens GTF2A2 protein.               90   4e-18
BT007362-1|AAP36026.1|  109|Homo sapiens general transcription f...    90   4e-18
BC001919-1|AAH01919.1|  109|Homo sapiens general transcription f...    90   4e-18
BC000287-1|AAH00287.1|  109|Homo sapiens general transcription f...    90   4e-18

>X81713-1|CAA57357.1|  109|Homo sapiens smallest subunit of TFIIA
           protein.
          Length = 109

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
           ++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53  RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52


>U21242-1|AAB58247.1|  109|Homo sapiens transcription factor TFIIA
           small subunit p12 protein.
          Length = 109

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
           ++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53  RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52


>U14193-1|AAA64951.1|  109|Homo sapiens transcription factor IIA
           small 12 kDa subunit protein.
          Length = 109

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
           ++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53  RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52


>CR542192-1|CAG46989.1|  109|Homo sapiens GTF2A2 protein.
          Length = 109

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
           ++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53  RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52


>BT007362-1|AAP36026.1|  109|Homo sapiens general transcription
           factor IIA, 2, 12kDa protein.
          Length = 109

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
           ++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53  RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52


>BC001919-1|AAH01919.1|  109|Homo sapiens general transcription
           factor IIA, 2, 12kDa protein.
          Length = 109

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
           ++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53  RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52


>BC000287-1|AAH00287.1|  109|Homo sapiens general transcription
           factor IIA, 2, 12kDa protein.
          Length = 109

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 404
           ++R+ F+ G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 53  RNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +1

Query: 97  MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,814,693
Number of Sequences: 237096
Number of extensions: 1142897
Number of successful extensions: 5581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5581
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)