Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00140
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-9|CAC35842.1|  113|Caenorhabditis elegans Hypothetical ...    65   3e-11
U32305-4|AAK18861.1|  139|Caenorhabditis elegans Hypothetical pr...    62   2e-10
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    29   3.1  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical...    27   9.4  

>AL132904-9|CAC35842.1|  113|Caenorhabditis elegans Hypothetical
           protein Y111B2A.13 protein.
          Length = 113

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 24/51 (47%), Positives = 39/51 (76%)
 Frame = +3

Query: 249 SKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 401
           +K+++ F+A KL  YR+CDNVWTF++  ++ R+  E   V+++KIVACDG+
Sbjct: 55  AKNKVNFRADKLRAYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQ 105



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/50 (46%), Positives = 36/50 (72%)
 Frame = +1

Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNR 249
           +YQLYRNTT+G  LQ++LD+ +    I  +L+ K++  FDKSIN+ L ++
Sbjct: 5   NYQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHK 54


>U32305-4|AAK18861.1|  139|Caenorhabditis elegans Hypothetical
           protein B0336.13 protein.
          Length = 139

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
 Frame = +3

Query: 189 TSSKSFAAIRQIYKSSSVQ*S---KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQEL 359
           T S +   ++Q  KS + Q S   K ++ F A +L TYR+CDNVWTF+LN+V  ++ Q  
Sbjct: 30  TKSLASKVLQQFDKSMNKQISRLPKEKMNFCATQLLTYRYCDNVWTFILNNVTLKDPQRS 89

Query: 360 --AKVEKVKIVACDGK 401
               ++K+K+VACDG+
Sbjct: 90  FDEPIDKLKVVACDGR 105



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/48 (50%), Positives = 35/48 (72%)
 Frame = +1

Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALS 243
           SY LYR TT+G  L ++L+++   G +T +LA KVL QFDKS+N+ +S
Sbjct: 3   SYALYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQIS 50


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +3

Query: 162 DPIWTNNTSTSSKSFAAIRQIYKSSSVQ*SKSRLTFKAGKLNTYRFCDNVWT-FMLNDVE 338
           D +W+N  +  S     +     SS VQ +KS+L +   KL  Y      +  F L  V 
Sbjct: 250 DQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTLKHVT 309

Query: 339 F-REVQELAKVEKVKIVACDGKNVD 410
                QEL +V   K+V C  ++++
Sbjct: 310 LCHSHQELMRVRSPKVVLCSSQDME 334


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVAC 392
           K ++  + G+  TY +CDN + F  +   FR   ++A V  V   +C
Sbjct: 165 KLKMEQRFGQFETYMWCDNCFFFNFDSNLFRWFFDIAAVSVVLGASC 211


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 37  CIRNTKYFYFLFNCSVI*TVMSYQLYRNTTIGNTLQ 144
           C RN+ Y +  F+C +    + ++LY N  +GN +Q
Sbjct: 330 CHRNS-YVFVSFSCKIFCDFIFWKLYFNEQLGNLMQ 364


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 300  CDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKNVDD 413
            CD+V T  L+D E+R  ++  +V+K     C   NV D
Sbjct: 917  CDDVDTNNLSDEEYRMYKKRCQVKKTPKDNCSNVNVKD 954


>Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 431 SYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFNIIQHKS 315
           SY L   + I T   Y+FN  HL    YF++  + +H+S
Sbjct: 84  SYLLCIFLRIETTLQYFFNLAHLLLVTYFAR-QVSKHRS 121


>AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 431 SYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFNIIQHKS 315
           SY L   + I T   Y+FN  HL    YF++  + +H+S
Sbjct: 84  SYLLCIFLRIETTLQYFFNLAHLLLVTYFAR-QVSKHRS 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,982,635
Number of Sequences: 27780
Number of extensions: 206089
Number of successful extensions: 517
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)