Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00140
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.93 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   8.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 138 TSRKPRRADPIWTNNTSTSSKSFAAIRQIYKSSSVQ 245
           T++KPR   P   NN +T +     ++  + SS V+
Sbjct: 190 TAKKPRVLSPPLNNNDATPTDFSMGVKNNHVSSKVE 225


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 300 CDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKNVDD 413
           C N  T     ++ R+VQE+ K E       D + VDD
Sbjct: 13  CVNAMTIEELKIQLRDVQEICKAES----GIDQQTVDD 46


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 332 IIQHKSPYIITKPVCVKFS 276
           I+Q  S Y  TKP+ +K+S
Sbjct: 566 ILQAPSLYDTTKPIDIKYS 584


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 267 FKAGKLNTYRFCDNVWTF 320
           FK   LNT    DNV+ F
Sbjct: 475 FKEANLNTRMLNDNVFAF 492


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 326 QHKSPYIITKPVCVKFSCFKG 264
           Q   P ++ KP+C+K  C  G
Sbjct: 51  QRFCPNVVPKPLCIKI-CAPG 70


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 326 QHKSPYIITKPVCVKFSCFKG 264
           Q   P ++ KP+C+K  C  G
Sbjct: 51  QRFCPNVVPKPLCIKI-CAPG 70


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 267 FKAGKLNTYRFCDNVWTF 320
           FK   LNT    DNV+ F
Sbjct: 475 FKEANLNTRMLNDNVFAF 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,404
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)