Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00140
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24440.2 68417.m03504 transcription initiation factor IIA gam...    62   2e-10
At4g24440.1 68417.m03503 transcription initiation factor IIA gam...    62   2e-10
At1g53140.1 68414.m06017 dynamin family protein low similarity t...    31   0.41 
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C...    28   3.8  
At2g07170.1 68415.m00821 expressed protein                             27   8.7  

>At4g24440.2 68417.m03504 transcription initiation factor IIA gamma
           chain / TFIIA-gamma (TFIIA-S) identical to transcription
           initiation factor IIA gamma chain SP:Q39236 from
           [Arabidopsis thaliana];
          Length = 106

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/51 (50%), Positives = 42/51 (82%)
 Frame = +1

Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           +++LYR +TIG  L E+LDE++Q G ++P LA++VL+QFDKS+ +AL ++V
Sbjct: 3   TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQV 53



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 401
           K++++ K G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct: 54  KTKVSIK-GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK 102


>At4g24440.1 68417.m03503 transcription initiation factor IIA gamma
           chain / TFIIA-gamma (TFIIA-S) identical to transcription
           initiation factor IIA gamma chain SP:Q39236 from
           [Arabidopsis thaliana];
          Length = 106

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/51 (50%), Positives = 42/51 (82%)
 Frame = +1

Query: 100 SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRV 252
           +++LYR +TIG  L E+LDE++Q G ++P LA++VL+QFDKS+ +AL ++V
Sbjct: 3   TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQV 53



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 252 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 401
           K++++ K G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct: 54  KTKVSIK-GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK 102


>At1g53140.1 68414.m06017 dynamin family protein low similarity to
           dynamin-like protein E [Arabidopsis thaliana]
           GI:19423872; contains Pfam profile PF00350: Dynamin
           family
          Length = 817

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 464 VRSLIKPSK-LISYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFN 333
           V++L K  K L+ + L +V + +++ CY  N+   G F  ++KFN
Sbjct: 561 VKNLAKQCKQLVRHHLDSVTSPYSMACYENNYHQGGAFGAYNKFN 605


>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
           Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
           profile PF00888: Cullin family
          Length = 792

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 112 YRNTTIGNTLQESLDELIQYGQITPA 189
           Y+N + GNT+++S + LI   Q  PA
Sbjct: 413 YKNESFGNTIKDSFEHLINLRQNRPA 438


>At2g07170.1 68415.m00821 expressed protein
          Length = 893

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 418 LRSSTFLPSHATILTFSTLANSCTSRNSTSFNIKVHTLSQNLY 290
           + +S F+  H    T S   +SCTSR ST    +  TLS + Y
Sbjct: 573 ISNSNFV-KHNQGSTISPRLSSCTSRTSTDIRNRQSTLSTSKY 614


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,335
Number of Sequences: 28952
Number of extensions: 176063
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)