Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00139
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    27   3.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   3.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   3.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.6  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   8.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   8.3  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   8.3  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   8.3  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   8.3  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   8.3  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   8.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   8.3  

>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
 Frame = +2

Query: 347 EGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKKLIHTT 526
           E +S+ VP++P+ +N        ++  I++ E   E  ++V DT++  LHK  K  +  T
Sbjct: 128 ETVSENVPHSPQSSN-------DAIPVIKITE---ENSFRVKDTLYVGLHKDQKLAMVGT 177

Query: 527 ---TDIRAWYIMPGVT-TTMCV*TNPMNS 601
                +R  + + G T ++ C+   P+N+
Sbjct: 178 FIFRSVRGKFQLFGATYSSACMSWFPLNA 206


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 481 IPKSSQENEKIDPYYNRYSSMVHH 552
           + +SSQE  + D Y   Y+S+VHH
Sbjct: 19  LEESSQEPLRADNYEEIYNSLVHH 42


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 681 FKFYIALVSIICFLVEAKRHTYFDNHVEFIGFVYTHIVVVTPGMM 547
           +KF I +V ++CF + +    +FD H++F   +  H+ +V  G +
Sbjct: 282 YKFPIPIV-LLCFFLYSLLTPFFDIHLQF-QLIVMHMSIVQVGFI 324


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 718  PIFRWNISRHVWVQILYRSRFDYLFSRGSKE 626
            PI++ N++ H W+Q+      +Y  S+ +++
Sbjct: 1226 PIYKENVTIHTWMQLFSLKLMEYAHSQNAEK 1256


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 297 RKRASIETAGLQSRN-AKKGLATKYLTIQKLLI 392
           R R SIETAGL SR+ A   +A   L ++ L +
Sbjct: 140 RTRLSIETAGLTSRSLAINNVANNSLKVKPLTL 172


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 320 SRAPESKCKEGISDKVPYNPKITNLES 400
           S  P    +EGI D +P NP   N+ S
Sbjct: 609 SDLPPDSVREGIKDVLPINPHTGNIYS 635


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 484 PKSSQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIE-IGVPLCFH 639
           P +++ENE +  Y  RY   +           I K  EFD  ++  GV +C H
Sbjct: 221 PIAAKENESLPDYAQRYKQAI-----------IEKYGEFDFAVDATGVGICIH 262


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 317 NSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLH 496
           +S  P+S+  E  S      P+IT+L         R  +L ++    H   L  +F N+H
Sbjct: 91  SSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIH 150

Query: 497 KKMK 508
           ++++
Sbjct: 151 RELE 154


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 481 IPKSSQENEKIDPYYNRYSSMVHHAGSHYD 570
           + +S+ +NE++DP+Y R S    +    YD
Sbjct: 5   VVQSASKNEELDPHYKRSSVPFPYGLPDYD 34


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 466 SARYNIPKSSQENEKIDPYYNRYSSMVH 549
           SA   +PK   +  K+DP   R SS +H
Sbjct: 117 SAASEVPKKKYKKIKVDPSARRTSSRMH 144


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 326 APESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVL 472
           +P  +   GIS    Y P  + L+S L DI  ++  ++ES  E+   +L
Sbjct: 26  SPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEVDCSML 74


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 203  NYKYFDAHRLRGNYNTAHIELHITWCRIRHEEKTGFNR 316
            +Y+ F     RGN + +HI   I +CR+     TG+ R
Sbjct: 1538 DYREFIRWLSRGN-SRSHINSWIGYCRLTRTRITGYKR 1574


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -2

Query: 618 YFDNHVE----FIGFVYTHIVVVTPGMMYHARISVVVWINFFI 502
           YF +H E    F+G  Y   ++++P +      S  VW+N FI
Sbjct: 80  YFLDHTEPDELFVGLGYWSSLLLSPTLNAGTSNSDTVWVNGFI 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,183
Number of Sequences: 5004
Number of extensions: 65487
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)