Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00139
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0532 + 11227074-11227349,11227567-11227969,11228228-112285...    31   1.2  
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265...    29   2.8  
08_02_0774 - 21047696-21048889                                         29   3.7  
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136...    29   4.9  
01_06_1220 + 35493575-35494765                                         29   4.9  

>02_02_0532 +
           11227074-11227349,11227567-11227969,11228228-11228506,
           11228736-11228838,11228932-11229013,11229260-11229370,
           11229621-11229691,11229791-11229803
          Length = 445

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 448 F*TTLQSAR-YNIPKSSQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGV 624
           F  TL++A    IP  +   E I   Y +  S V H G    ++ I  PD  D+ +EI V
Sbjct: 177 FGRTLEAATAIAIPGRTYNGEFIPDEYAKVQSQVVHQGFESYDIDIPTPDVQDVPMEISV 236

Query: 625 P 627
           P
Sbjct: 237 P 237


>03_05_0932 +
           28924891-28924935,28925982-28926062,28926464-28926512,
           28926599-28926677,28926762-28926921,28927307-28927440,
           28927814-28927882,28928064-28928151,28928396-28928471,
           28929267-28929340,28929478-28929585,28929858-28930160,
           28930483-28930587,28930670-28930750,28930838-28931852,
           28932086-28932201
          Length = 860

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 493 SQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPD 594
           S +N  IDPY+NR +++V   G     + + KPD
Sbjct: 468 SLDNIIIDPYFNRITALVQSCGDDVSEIDV-KPD 500


>08_02_0774 - 21047696-21048889
          Length = 397

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 231 YAGITTRPILSYTSPGAEF---GTRRKRASIETAGLQSRNAKKGLATKYLTI 377
           +AGIT  P+LS T P   F    T +    I+ AG +   AK G  +  L++
Sbjct: 251 HAGITILPLLSKTMPSVTFTDEETEQLTKRIQNAGTEVVEAKAGAGSATLSM 302


>05_01_0190 +
           1366791-1366817,1367536-1367616,1367858-1367900,
           1368104-1368182,1368291-1368450,1368565-1368692,
           1369134-1369202,1369796-1369883,1370516-1370591,
           1370767-1370840,1372635-1372742,1373783-1373944,
           1374179-1374283,1374447-1374527,1374603-1375803,
           1376654-1376750,1378086-1378160,1378461-1378623
          Length = 938

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 493 SQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPD 594
           S E+  IDPY+NR +S++ +     + V + KPD
Sbjct: 411 SLESLMIDPYFNRITSLLRNCNEDVNEVDV-KPD 443


>01_06_1220 + 35493575-35494765
          Length = 396

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 231 YAGITTRPILSYTSPGAEF---GTRRKRASIETAGLQSRNAKKGLATKYLTI 377
           +AGIT  P+LS T P   F    T      I+ AG +   AK G  +  L++
Sbjct: 251 HAGITILPLLSKTRPSVTFTNEETEELTRRIQNAGTEVVEAKAGAGSATLSM 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,107,482
Number of Sequences: 37544
Number of extensions: 365115
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)