Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00139
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)                33   0.23 
SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3)                 33   0.23 
SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)                 31   0.95 
SB_23591| Best HMM Match : PAN (HMM E-Value=5.9e-07)                   30   1.7  
SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)                      29   2.9  
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                29   5.0  
SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)                      29   5.0  
SB_29698| Best HMM Match : DUF1610 (HMM E-Value=4.6)                   28   6.7  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_40800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_5750| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/43 (37%), Positives = 30/43 (69%)
 Frame = +1

Query: 490 SSQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEI 618
           +SQ  +K+  +  R+   + ++GSHY+ ++++ PDEFD +IEI
Sbjct: 105 ASQFAKKVACHDARFKGEILNSGSHYEGLQVSAPDEFDYMIEI 147


>SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)
          Length = 364

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 556 GSHYDNVRINKPDEFDMVIEI 618
           GS+Y+  ++  PDEFD++IEI
Sbjct: 58  GSYYERAKVKNPDEFDLMIEI 78


>SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3)
          Length = 100

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 556 GSHYDNVRINKPDEFDMVIEI 618
           GS+Y+  ++  PDEFD++IEI
Sbjct: 58  GSYYERAKVKNPDEFDLMIEI 78


>SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)
          Length = 489

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 191 YNKFNYKYFDAHRLRGNYNTAHIELHITWCRIRHEEKTGFNRNSRAPES 337
           YNKF  K  +      +YN    EL+++W +IR     G +R+ R  ++
Sbjct: 228 YNKFGEKAGEVIGAALSYNNGITELNLSWNQIRRRGAQGIHRSLRVNDT 276


>SB_23591| Best HMM Match : PAN (HMM E-Value=5.9e-07)
          Length = 336

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 227 RLRGNYNTA----HIELHITWCRIRHEEKTGFNRNSRAPESKCKEG-ISDKVPYNPKITN 391
           R+RG  NT     +  L +T C  R +  + FN   R P S CK+  I+D+ P   ++TN
Sbjct: 134 RIRGRLNTRMRIRYSALSVTGCIPRPQAASRFNSEHRKPASGCKKVIITDEQP-GKELTN 192


>SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)
          Length = 340

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 556 GSHYDNVRINKPDEFDMVIEI 618
           GS Y+ ++I  PDEFD +IE+
Sbjct: 140 GSTYEMLKIGMPDEFDFMIEL 160


>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 231 YAGITTRPILSYTSPGAEF---GTRRKRASIETAGLQSRNAKKGLATKYLTIQK 383
           ++G+T  P+LS T+P   F      +    I+ AG +  NAK G   + L  +K
Sbjct: 144 HSGVTILPLLSQTTPNVTFTQDELEKLTDRIQNAGTEVVNAKAGAVIEALNGKK 197


>SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)
          Length = 318

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 685 WVQILYRSRFDYLFSRGSKEAHLFR*PCRIHRVCLYAHCRSDSRH 551
           W + ++R R   + +  +  AH  R   R+H +  +  C+SDS+H
Sbjct: 14  WAESMFRGRNVVVLTPENDLAHGHRNNSRLHDINGWVWCQSDSQH 58


>SB_29698| Best HMM Match : DUF1610 (HMM E-Value=4.6)
          Length = 739

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 517 PYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVPLCFHEKTNNRNE 663
           P Y  Y+   H  G   D+V     D  D+V + G P   + +  ++NE
Sbjct: 160 PAYQEYTEATHSMGGCEDSVFGGASDAIDLVRKYGFPTNVYRQHLDQNE 208


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
 Frame = +2

Query: 320 SRAPESKCKEGISDKVPYNPKITNLESLLADIS-----VRYIQLKESDFELHYKVLDTIF 484
           S+  + K  +G +        + +LE   AD+S     +R +  + SD ++     +  +
Sbjct: 210 SKVLKDKLYKGAAAAESAGQNLLSLEGPDADLSGVDEELRALNERVSDLKVRLSAFEEHY 269

Query: 485 QNLHKKMKK---LIHTTTDIRAWYI 550
           QNLH++M++   L+ T T    W I
Sbjct: 270 QNLHREMEQARPLLSTATASGEWLI 294


>SB_40800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 526 NRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVPLCFHEKTNNRNES 666
           N+  +  H +G   D + + KP    +  +  +  C H KT N NES
Sbjct: 86  NKTKTFKHGSGLPKDIIALTKPIYLRLSDDELLKKCLHGKTQNHNES 132


>SB_5750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 526 NRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVPLCFHEKTNNRNES 666
           N+  +  H +G   D + + KP    +  +  +  C H KT N+NES
Sbjct: 127 NKTKTFKHGSGLPKDIIALMKPIYLRLSDDELLKKCLHGKTQNQNES 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,062,214
Number of Sequences: 59808
Number of extensions: 478366
Number of successful extensions: 1319
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)