Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00139
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    31   1.1  
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    30   1.5  
AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormo...    29   3.4  
AF016424-9|AAB65327.2|  530|Caenorhabditis elegans Udp-glucurono...    29   3.4  
AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    29   3.4  
Z46787-13|CAA86748.1|  281|Caenorhabditis elegans Hypothetical p...    29   4.4  
AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical...    29   4.4  
U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensi...    28   7.8  
U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  TNYLYFIKFITQHKSKRHTFVICFHESQTKQFFTIE 134
           ++ LY +KFI + +     F +  H   T++FFT +
Sbjct: 163 SSILYVVKFIPEDQDAAKQFALTLHPCPTREFFTFD 198


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 544 VHHAGSHYDNVRINKPDEFDMVIEIGVPLCFHEKTNNRNESDI 672
           V H   ++ +  I   D+F++ + +GV    H K +N NE+D+
Sbjct: 280 VRHYTFYHGDEEIKMSDKFNIFVNVGVSQGAHLKIHNVNENDL 322


>AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical
           protein K02E7.11 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = -2

Query: 681 FKFYIALVS-IICFLVEAKR----HTYFDNHVEFIGFVYTHIVVVTPGMMYHARISVVVW 517
           F ++I+ +S +IC L + KR    H YF++ + FI F    I++V+  M+      V  +
Sbjct: 61  FLWFISSISALICVLQDQKRYLRFHIYFNSVITFIYFCKLIILLVSINMVTSILCIVCNF 120

Query: 516 INF 508
           +NF
Sbjct: 121 VNF 123


>Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical
           protein T11A5.2 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 663 LVSIICFLVEAKRHTYFDNHVEFIGFVYTHIVVVTPGMMYHARISVVVWINF 508
           L++I+ FL+ A    +  +   F G V  + V  TP   Y A++   V I F
Sbjct: 146 LLAIVHFLIAALPLCFLYSQTRFDGAVMYYCVTATPSAPYSAQVGATVSICF 197


>U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical
           protein T19A5.3b protein.
          Length = 422

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 517 PYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVP 627
           P  N  SS   H+G HY   ++N P + + ++E+  P
Sbjct: 84  PLLNTESSESSHSGHHYTIRQLNAPKKVEKLVEVERP 120


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 517 PYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVP 627
           P  N  SS   H+G HY   ++N P + + ++E+  P
Sbjct: 152 PLLNTESSESSHSGHHYTIRQLNAPKKVEKLVEVERP 188


>AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 103 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 236 GNYNTAHI---ELHITWCRIRHEEKTGFNRNSRAPESKCKEGISDKVPYNPKITNLESLL 406
           GN +  H+   E+ ++WC     E+  F   +   E   ++ I D V  NP  T +  +L
Sbjct: 244 GNDSCMHMNDYEVDLSWCTNYSLEQLAFFFLTPDDEKNYRQLIQDMVDLNPSSTEISYML 303

Query: 407 ADISVRY 427
             +S+ +
Sbjct: 304 LQLSLEH 310


>AF016424-9|AAB65327.2|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein61 protein.
          Length = 530

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 582 YTHIVVVTP-GMMYHARISVVVWIN 511
           YTHI    P G+++HA+I   VW+N
Sbjct: 143 YTHIYSTCPLGLIHHAKIPSWVWLN 167


>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 231 YAGITTRPILSYTSPGAEFGTR---RKRASIETAGLQSRNAKKGLATKYLTI 377
           +AGIT  P+LS   P  +F      +    I+ AG +  NAK G  +  L++
Sbjct: 204 HAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSATLSM 255


>Z46787-13|CAA86748.1|  281|Caenorhabditis elegans Hypothetical
           protein C16C10.10 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 227 RLRGNYNTAHIELHITWCRIRHEEKTGFNRNSRA-PESKCKEGISDKV 367
           R+R +Y     EL I   + + + KTGF R + + PE K  E + DK+
Sbjct: 165 RIRMSYGDGQCELEIVKSQDKIDRKTGFGRIAFSYPEDKL-ESLQDKI 211


>AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical
           protein Y52B11A.10 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 353 ISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKK 502
           I DK+  N  +TNL ++   I+  Y  LK++ + L  + +D I     KK
Sbjct: 458 IIDKLAENLNLTNLFAIRTLIAYAYKSLKKTSWPLVTQKIDEIHSEFEKK 507


>U61949-1|AAY44009.1|  948|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform b
           protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 217 RRSSFTRELQHGPY*VTHHLVPNSARGENGL 309
           RR SF    Q  PY  T +++  +ARGE+G+
Sbjct: 35  RRLSFVAGAQCRPYHTTANMLHRTARGEHGM 65


>U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical
           protein T03G11.3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +2

Query: 239 NYNTAHIELHITWCRIRHEEKTGFNRNSRAPESKCKEGISDKVPYNPKITNLESLLADIS 418
           N+N A  E HI +CR +   K G N  S +  ++   G     P   ++  LE +    S
Sbjct: 139 NFNAAAAERHIPFCREQATRKQGGNLKS-SGGNRALTGNYRSTPSKNEVRALEFMAIFFS 197

Query: 419 VRYIQLKESD 448
             + Q K+ +
Sbjct: 198 FFWFQGKKQE 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,766
Number of Sequences: 27780
Number of extensions: 365262
Number of successful extensions: 996
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)