Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00139
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19090.1 68415.m02229 expressed protein contains Pfam profile...    29   2.4  
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa...    29   4.1  
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa...    29   4.1  
At5g10150.1 68418.m01175 expressed protein                             28   5.5  
At3g47520.1 68416.m05168 malate dehydrogenase [NAD], chloroplast...    28   5.5  
At1g68790.1 68414.m07863 expressed protein                             28   5.5  
At5g55010.1 68418.m06851 hypothetical protein                          28   7.2  
At5g17630.1 68418.m02067 glucose-6-phosphate/phosphate transloca...    27   9.5  
At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles:
           PF04782 protein of unknown function (DUF632), PF04783
           protein of unknown function (DUF630); expression
           supported by MPSS
          Length = 814

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 475 YNIPKSSQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPDEFD 603
           +NIP  S +N + D ++N +SS+ ++  + YD   ++     D
Sbjct: 191 HNIPPPSPQNSQWDFFWNPFSSLDYYGYNSYDRGSVDSRSGID 233


>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 885

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 493 SQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPD 594
           S E+  +DPY+NR +S + H       + + KPD
Sbjct: 410 SVEHVIVDPYFNRITSKMKHCDEEVTEIEV-KPD 442


>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 873

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 493 SQENEKIDPYYNRYSSMVHHAGSHYDNVRINKPD 594
           S E+  +DPY+NR +S + H       + + KPD
Sbjct: 410 SVEHVIVDPYFNRITSKMKHCDEEVTEIEV-KPD 442


>At5g10150.1 68418.m01175 expressed protein
          Length = 414

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 290 HEEKTGFNRNSRAPESKCKEGIS-DKVPYNPKITNLESLLADISVR 424
           +EEKT +  +S  P+S+C  G+S + +    +  NL     D+ VR
Sbjct: 193 YEEKTSYT-SSTTPQSRCSRGVSTETMESTEQKPNLTKTEQDLQVR 237


>At3g47520.1 68416.m05168 malate dehydrogenase [NAD], chloroplast
           (MDH) identical to chloroplast NAD-malate dehydrogenase
           [Arabidopsis thaliana] GI:3256066; contains InterPro
           entry IPR001236: Lactate/malate dehydrogenase; contains
           Pfam profiles PF00056: lactate/malate dehydrogenase, NAD
           binding domain  and PF02866: lactate/malate
           dehydrogenase, alpha/beta C-terminal domain
          Length = 403

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 231 YAGITTRPILSYTSPGAEF---GTRRKRASIETAGLQSRNAKKGLATKYLTI 377
           +AGIT  P+LS T P   F     +     I+ AG +  +AK G  +  L++
Sbjct: 258 HAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSM 309


>At1g68790.1 68414.m07863 expressed protein
          Length = 1085

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
 Frame = +2

Query: 287 RHEE--KTGFNRNSRAPESKCKEGISDKVPYNPKITN------------LESLLADISVR 424
           R EE  +  FN  +R  E + +E + D + Y  K+              LE     ISVR
Sbjct: 616 RQEEAGERDFNERARTYEKRSQEEL-DNINYTKKLAQREMEEMQYEKLALEREREQISVR 674

Query: 425 YIQLKESDFELHYKV--LDTIFQNLHKKMKKLI 517
              LKE + E+H  +  LD +  +L +K K+ I
Sbjct: 675 KKLLKEQEAEMHKDITELDVLRSSLKEKRKEFI 707



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 284 IRH-EEKTGFNRNSRAPESKCKEGISDKVPY-NPKITNLESLLADISVRYIQLKESDFEL 457
           I H EE+   N  +   + K  E +  K+     ++T  E  +  I +  I LKE DFE 
Sbjct: 264 INHREERVMENERTIEKKEKILENLQQKISVAKSELTEKEESIK-IKLNDISLKEKDFEA 322

Query: 458 HYKVLDTIFQNLHKKMKKLI 517
               +D   + LH+  + LI
Sbjct: 323 MKAKVDIKEKELHEFEENLI 342


>At5g55010.1 68418.m06851 hypothetical protein
          Length = 109

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 21  LKTNYLYFIKFITQ---HKSKRHTFVICFH 101
           L T  LY  KF++     KS++ TF++CFH
Sbjct: 75  LNTYSLYDFKFVSNFLDRKSRQITFLLCFH 104


>At5g17630.1 68418.m02067 glucose-6-phosphate/phosphate
           translocator, putative similar to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] gi|2997593|gb|AAC08526
          Length = 417

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 240 ITTRPILSYTSPGAEFGTRRKRASIETAGLQSRN 341
           ++ +P+LS T+P +  G  RK  SI   G    N
Sbjct: 57  VSAKPLLSLTNPESSSGFSRKPRSIAAVGSSDSN 90


>At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1006

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 478 NIPKSSQENEKIDPYYNRYSSMVHHAGSHYDN--VRINKPDEFDMVIE 615
           N  +SS    K + +  RYS   HH  S       R +K DE ++V+E
Sbjct: 256 NSGESSVTMPKDESFRRRYSKQEHHRSSDTSRGIARGSKGDELELVVE 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,403
Number of Sequences: 28952
Number of extensions: 318707
Number of successful extensions: 773
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)