Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00138
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   2e-09
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  54   6e-08
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            43   1e-04
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.008
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    27   4.8  
SB_43297| Best HMM Match : Astacin (HMM E-Value=3.5e-31)               27   8.3  
SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)                      27   8.3  

>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = +3

Query: 12  GVRPFGVSLLICGWEEGRPYLFQCDPSGAY 101
           GVRPFGVSLL+ GW++ RPYLFQCDPS ++
Sbjct: 2   GVRPFGVSLLVAGWDDDRPYLFQCDPSESF 31



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 257 IEVGICDASGFRRLEPAHVKDYLANI 334
           IE+G+C+ +GFRRL P  VKDYLA I
Sbjct: 40  IELGVCNENGFRRLTPPEVKDYLAAI 65


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +3

Query: 3   QSGGVRPFGVSLLICGWE-EGRPYLFQCDPSGAYFAWKATAMG 128
           QS G RPFG+S LI G++ +G P L+Q DPSG Y AWK    G
Sbjct: 122 QSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
 Frame = +3

Query: 3   QSGGVRPFGVSLLICGWEEGR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED 179
           Q+  +RP G  +++ G +E + P L++ DP+G +  +KA ++G       +FLEK+  + 
Sbjct: 105 QNAEMRPLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKK 164

Query: 180 --LELDDAVHTAILTL 221
                ++ V TAI  L
Sbjct: 165 HAWTFNETVETAISCL 180


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 66  PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE---DLELDDAVHTAILTLKEGFE 236
           P++FQ  PS  YF  KA A+G    + +T+LEK Y +   D E ++ +   +  L+E   
Sbjct: 4   PHIFQTCPSANYFDCKAMAIGARSQSARTYLEK-YLDAFGDCEPEELIKHGLKALRETLP 62

Query: 237 GQMTADT 257
            +    T
Sbjct: 63  NEQELTT 69


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/61 (19%), Positives = 28/61 (45%)
 Frame = +3

Query: 39  LICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILT 218
           +ICGW++  P L+  D  G   + +  ++G         ++  Y  D+  ++A    + +
Sbjct: 154 MICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYDMSPEEAYDLGVRS 213

Query: 219 L 221
           +
Sbjct: 214 I 214


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 111  KATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTAD 254
            +A   G  F+  KT       +DLE  DA+H  +L  + G E + + D
Sbjct: 1178 QADPTGLEFHTEKTDENLLKEDDLETKDALHKDVLNEERGIEKENSFD 1225


>SB_43297| Best HMM Match : Astacin (HMM E-Value=3.5e-31)
          Length = 716

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 281 SGFRRLEPAHVKDYLANIP*DVYGQCAQMNNK 376
           SG R + P+HV+     +    YG CAQ++ K
Sbjct: 616 SGERGMGPSHVQGSRTRLRTSPYGVCAQVDGK 647


>SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)
          Length = 542

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 380 FVYYSFERIARTHLKVC*PDNPSRGLALSDGTRSRH-RCQ 264
           F  +  E  AR+HL+ C P     G+ L++ T   H RC+
Sbjct: 105 FNLFQHESYARSHLERCEPAKSVMGIFLTENTFLFHERCE 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,764
Number of Sequences: 59808
Number of extensions: 287562
Number of successful extensions: 670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)