Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00138
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...   135   1e-32
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    71   3e-13
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    63   9e-11
Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...    45   3e-05
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    41   3e-04
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    37   0.005
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68879-10|CAA93082.2|  473|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine rece...    26   9.5  
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    26   9.5  

>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score =  135 bits (326), Expect = 1e-32
 Identities = 63/97 (64%), Positives = 75/97 (77%), Gaps = 2/97 (2%)
 Frame = +3

Query: 3   QSGGVRPFGVSLLICGWEE--GRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 176
           QSGGVRPFG SLLI GW++  GRP LFQCDPSGAYFAWKATA+GKN  N KTFLEKR++E
Sbjct: 119 QSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE 178

Query: 177 DLELDDAVHTAILTLKEGFEGQMTADT*KLASVTRAG 287
            LELDD +HTA+LTL+E F+  M  +  ++A     G
Sbjct: 179 ALELDDGIHTALLTLRESFDVGMNENNVEVAVCNSTG 215



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 257 IEVGICDASGFRRLEPAHVKDYLANI 334
           +EV +C+++GF RL    V D+L  +
Sbjct: 206 VEVAVCNSTGFHRLTKQQVHDHLGTL 231


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   QSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED 179
           Q GG RPFGVSLL  GW++   Y L+Q DPSG Y  WKAT +G N     T L++ Y + 
Sbjct: 123 QIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEY-KS 181

Query: 180 LELDDAVHTAILTLKEGFEGQMTADT*KLASVTR 281
             L++A   AI  L +  + ++ ++  ++A +TR
Sbjct: 182 PNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLTR 215


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 62.9 bits (146), Expect = 9e-11
 Identities = 29/66 (43%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
 Frame = +3

Query: 3   QSGGVRPFGVSLLICGWE-EGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED 179
           QS G RPFG+S+LI G++ +G P LF+ +PSGAY+ + A A G+     + +LE++Y+E+
Sbjct: 121 QSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEE 180

Query: 180 LELDDA 197
             +D+A
Sbjct: 181 NTVDEA 186


>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/78 (29%), Positives = 44/78 (56%)
 Frame = +3

Query: 18  RPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDA 197
           RPFGV++L  G ++    LF  DPSG +   KA ++G   +  +  L+++Y + L + + 
Sbjct: 134 RPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEG 193

Query: 198 VHTAILTLKEGFEGQMTA 251
           +  A+  LK+  E ++ +
Sbjct: 194 LKMALAILKQVMEEKLNS 211


>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +3

Query: 12  GVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEK 164
           G RPFGV +LI G+++   ++ Q DPS    +   T++G    + +T+LE+
Sbjct: 124 GRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLER 174


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 18  RPFGVSLLICGWEE---GRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLEL 188
           RPFG       W +   GR  LF  +PSG  + +KA A+GK+    K  +EK   E+L++
Sbjct: 129 RPFGAGAFFMSWNKQTGGR--LFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDV 186

Query: 189 DDAVHTA 209
           +  V  A
Sbjct: 187 NQLVKEA 193


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +3

Query: 27  GVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHT 206
           G  LLI G +   P+L+ C  +G   A+  TA G       T LE+ +  D+  D+A   
Sbjct: 141 GAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKL 200

Query: 207 AILTLKEGFEG 239
               L+ G  G
Sbjct: 201 VQRALEAGMHG 211


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
 Frame = +3

Query: 3   QSGGVRPFGVSLLICGWEEGR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED 179
           Q+  +R  G +LL   +++ + P +++ DP+G Y   K  ++G       +FLEK+  + 
Sbjct: 127 QNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKK 186

Query: 180 LEL--DDAVHTAILTLKEGFEGQMTADT*KLASVTRAGS 290
            EL   +A+  AI  L+      + +   ++  VT+  S
Sbjct: 187 SELTSTEAIELAIEALQTSLGIDVRSKDLEVVVVTKDNS 225


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 296 LEPAHVKDYLANIP*DVYGQCAQMNNKRIFFL 391
           ++P  + +Y  N+P   YG C +MN +  F L
Sbjct: 74  IQPRILSEYQVNVPVYCYGPCREMNTQFCFSL 105


>Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.8 protein.
          Length = 123

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 87  PSGAYFAWKATAMGKNFNNGKTFLEKR 167
           P+ A + +K+    ++FNN KTF+  R
Sbjct: 45  PADAQYCYKSYLESRDFNNDKTFVSGR 71


>Z68879-10|CAA93082.2|  473|Caenorhabditis elegans Hypothetical
           protein K08F4.2 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 85  TPPEPILHGKPQPWERTLIMEKLSLKKDIQKTWS*MTQFTQLS*PLRXXXXXXXXQIHR 261
           TP +P L  +P P +R  + E +  +  +QKTW+ +      S P +        QIH+
Sbjct: 220 TPQKPQLAQQP-PQQRAPVPEPVQEQPKVQKTWANLVGGGGKSQPPQQQSYGQGQQIHQ 277


>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 6   SGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLE 185
           S G + + + LL+   E    ++ +CD    Y  W A    +  + GK+  +  Y +++E
Sbjct: 464 SVGQQKYHIKLLLPTAEGMIDFILKCDSEHQYARWMAAC--RLASRGKSMADSSYQQEVE 521


>U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein14 protein.
          Length = 337

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 166 LFSRKVFPLLKFFPMAVAFH 107
           +F +KVFPL+KF  +A++ +
Sbjct: 126 IFHKKVFPLVKFIVLALSIY 145


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 6   SGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLE 185
           S G + + + LL+   E    ++ +CD    Y  W A    +  + GK+  +  Y +++E
Sbjct: 464 SVGQQKYHIKLLLPTAEGMIDFILKCDSEHQYARWMAAC--RLASRGKSMADSSYQQEVE 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,408
Number of Sequences: 27780
Number of extensions: 217632
Number of successful extensions: 473
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)