Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00138
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 304 SPREGLSG*HTLRCV 348
           S REGL+G  T RCV
Sbjct: 38  SLREGLAGASTFRCV 52


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 108 WKATAMGKNFNNGKTFLEKRYT 173
           W A    +NF + K +L +R+T
Sbjct: 424 WIAGLNEENFKDAKKYLPERWT 445


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 301 ASPREGLSG*HTLRCVRAM 357
           A PRE  +    +RCV+AM
Sbjct: 298 AHPREEFNHWTVMRCVQAM 316


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 105 QNRLRRGHTGTGKDVLLPSHRSIEIPQRV 19
           ++R RRG   + +  ++PSH   +IP  V
Sbjct: 314 RSRDRRGRGRSREHRIIPSHYIEQIPAPV 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,445
Number of Sequences: 438
Number of extensions: 2678
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)