Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00134
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    30   0.33 
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    28   1.4  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    28   1.8  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   4.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.2  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
 Frame = +3

Query: 504  SKVKSGKYRDTAHVLENEKINYSENLISGQR---QTLVVVSMPGLNDWVQQ-LEDKQNYL 671
            S+ ++ K+R+    LE+   NY+E  ++ +R   QT V++S    +  +++ LE+K+N L
Sbjct: 942  SEQENNKFRERIAELESHLSNYAEAKLAQERELEQTRVLISDQSQDGELKELLEEKENAL 1001

Query: 672  KHLEE 686
              +EE
Sbjct: 1002 IMMEE 1006


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 265 ENIMSDIETTTPDRWIENEKIMKSKLMKLPNWYQIPLINSNASHNLSDGNLVRFRGMIQD 444
           ENI + + T  P ++  ++  +K  +  LP++Y + +   +  H   DG+ V    ++ D
Sbjct: 209 ENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILHVDHETGDGSAVGRAILLDD 268

Query: 445 M 447
           +
Sbjct: 269 V 269


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 507 KVKSGKYRDTAHVLENEKINYSENLISGQRQTLVVVSMPGLND 635
           K +S + +DT+ + EN K     +  S  +++L ++ + GLND
Sbjct: 31  KSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLND 73


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 627 LNDWVQQLEDKQNYLKHLEEPPNTSK-RLHPSTKLKRSYDDTED 755
           L++ V    D Q+  K LEE  NT+    H S K+K  Y+D ED
Sbjct: 660 LDEVVSYWTDFQSNSKVLEENLNTTDVEFHSSKKIK-DYEDLED 702


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 555 EKINYSENLISGQRQTLVVVSMPGLNDWVQQLEDKQNYLKHLEE----PPNTSKRLHPST 722
           E+I  +E  IS     +V +   G +DW   ++   N     EE    P N      PST
Sbjct: 25  EEIPENEREISIVEDEIVCLLEKGEDDWYL-VKRNVNSNDDDEEIGIVPSNYITEAEPST 83

Query: 723 KLKRSYDDTEDNL 761
           K+K  YD T+ ++
Sbjct: 84  KMKALYDYTQQSV 96


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 461 FTLRNLKYLTQQQMK*G*KWKIQRYCTC 544
           F+   L+ LT    K G  W++Q Y TC
Sbjct: 427 FSEEQLRNLTSDMAKLGVCWQVQPYFTC 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,184
Number of Sequences: 5004
Number of extensions: 57747
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)