Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00134
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_570| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035) 30 1.9
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 29 4.4
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 28 7.7
SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95) 28 7.7
SB_35622| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09) 28 7.7
>SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 355 NWYQIPLINSNASHNLSDGNLVRFRGMIQDMHNPEFYFEKFEVFNTTTNEVRL 513
N ++IP IN H L +LVRFR M+QDM PE++ ++EV + +T E L
Sbjct: 42 NIHRIPSINDTPLHYLKPNSLVRFRCMVQDMFGPEYFLSQYEVKSKSTGETVL 94
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 516 SGKYRDTAHVLENEKINY-SENLISGQRQTLVVVSMPGLNDWVQQ 647
SG YRD + ++++ S ++ ++QT V +PG +W +Q
Sbjct: 96 SGLYRDVVDCSGDLEVDFNSPKCVTSEKQTYYCVPIPGETEWAKQ 140
>SB_570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 355 NWYQIPLINSNASHNLSDGNLVRFRGMIQDMHNPEFYFEKFEVFNTTTNEVRL 513
N ++IP IN H L +LVRFR M+QDM PE++ ++EV + +T E L
Sbjct: 42 NIHRIPSINDTPLHYLKPNSLVRFRCMVQDMFGPEYFLSQYEVKSKSTGETVL 94
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 516 SGKYRDTAHVLENEKINY-SENLISGQRQTLVVVSMPGLNDWVQQ 647
SG YRD + ++++ S ++ ++QT V +PG +W +Q
Sbjct: 96 SGLYRDVVDCSGDLEVDFNSPKCVTSEKQTYYCVPIPGETEWAKQ 140
>SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035)
Length = 289
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 582 ISGQRQTLVVVSMPGLNDWVQQLEDKQNYLKHLEEPPNTSKRLHPS 719
+S + L +P L + LEDK +K++E PP+ R S
Sbjct: 244 LSNEAMELTKSGLPVLFSLISLLEDKDELMKYIERPPSEYSRSEES 289
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 687 PPNTSKRLHPSTKLKRSYDDTEDNLVKWKL 776
PP+ S RLHPS +R D + ++ W+L
Sbjct: 209 PPSWSIRLHPSLTNERGIKDLKGTVMPWEL 238
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = +3
Query: 510 VKSGKYRDTAHVLENEKINYSENLISGQRQTLVVVSMPGLNDWVQQLEDKQNYLKHLEEP 689
+K+ KYR+ L N++ + + + Q S ++ V ++ D+ ++ +E
Sbjct: 332 LKAMKYRELDRKL-NDRQSVRDAAVYEGEQVFTATSNATVHSQVTEVTDRWRAVR--QEA 388
Query: 690 PNTSKRLHPSTKLKRSYDDTEDNLVKWKLIM 782
+ +RL + R Y D+LV W +IM
Sbjct: 389 RDERQRLEKLLRSWREYQADMDDLVDWLVIM 419
>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 519 GKYRDTAHVLENEKINYSENLIS-GQRQTLVVVSMPGLNDWVQQLEDKQNYLKHLEEPPN 695
GKY++ VL + Y N S GQ + + +P L DW+ K ++ +H P
Sbjct: 117 GKYQNIG-VLRTNAMKYLPNFFSKGQGKVYFITDVPQLFDWM-----KNHFDEHPLFEPV 170
Query: 696 TSKRLHPSTKLKRSYDDTED 755
+ + + + YD TE+
Sbjct: 171 GDEEVASDPIVDKLYDSTEE 190
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 642 QQLEDKQNYLKHLEEPPNTSKRLHPSTKLKRSYDDTEDNLVK 767
+QL+D Y+K LE P K + K+++ T +NLV+
Sbjct: 278 EQLDDNAKYIKCLENPDEADK--YVKQKIQQRVKRTAENLVE 317
>SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)
Length = 221
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 642 QQLEDKQNYLKHLEEPPNTSKRLHPSTKLKRSYDDTEDNLVK 767
+QL+D Y+K LE P K + K+++ T +NLV+
Sbjct: 133 EQLDDNAKYIKCLENPDEADK--YVKQKIQQRVKRTAENLVE 172
>SB_35622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 642 QQLEDKQNYLKHLEEPPNTSKRLHPSTKLKRSYDDTEDNLVK 767
+QL+D Y+K LE P K + K+++ T +NLV+
Sbjct: 133 EQLDDNAKYIKCLENPDEADK--YVKQKIQQRVKRTAENLVE 172
>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
Length = 1487
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 642 QQLEDKQNYLKHLEEPPNTSKRLHPSTKLKRSYDDTEDNLVK 767
+QL+D Y+K LE P K + K+++ T +NLV+
Sbjct: 254 EQLDDNAKYIKCLENPDEADK--YVKQKIQQRVKRTAENLVE 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,136,671
Number of Sequences: 59808
Number of extensions: 393307
Number of successful extensions: 861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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