Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00134
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.82 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 281 SLMIFSCMIENVFINTIIVRYVLVDKQ*TESEFI 180
           ++ +F+ M+E  F+NTI  R   V  +   S++I
Sbjct: 302 TIFLFAAMVEFAFVNTIYRRKKTVPLKKVNSKYI 335


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +1

Query: 460 FYFEKFEVFNTTTNEVRLKVENTEILHMFWKMRKSTILR 576
           +    F +    T+++++   N +ILH+ W   K   ++
Sbjct: 76  YIIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFMK 114


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +1

Query: 460 FYFEKFEVFNTTTNEVRLKVENTEILHMFWKMRKSTILR 576
           +    F +    T+++++   N +ILH+ W   K   ++
Sbjct: 59  YIIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFMK 97


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 210 NQNITHDNSINEYIFNHA*KYH 275
           NQN  +DN+ N+   +H+ K H
Sbjct: 523 NQNNQNDNNRNDNQVHHSSKLH 544


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 298 PDRWIENEKIMKSKLMKLPNWY 363
           PD + +N K +  + M +PN Y
Sbjct: 121 PDSFFKNAKSVTFQTMTIPNHY 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,120
Number of Sequences: 438
Number of extensions: 4422
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)