Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00134
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40550.1 68415.m05003 expressed protein                             38   0.006
At1g68210.1 68414.m07792 two-component responsive regulator fami...    29   4.8  
At2g45040.1 68415.m05607 matrix metalloproteinase nearly identic...    28   6.3  
At5g59500.1 68418.m07457 expressed protein                             28   8.3  
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain...    28   8.3  

>At2g40550.1 68415.m05003 expressed protein
          Length = 589

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +1

Query: 364 QIPLINSNASHNLSDGNLVRFRGMIQDMHNPEFY 465
           Q+P+++S++   +    LVRFRGMIQDM   EFY
Sbjct: 56  QVPILDSSSIKWVQPKTLVRFRGMIQDMLGNEFY 89


>At1g68210.1 68414.m07792 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 663

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 633 DWVQQLEDKQNY---LKHLEEPPNTSKRLHPSTKLKRSYDDTEDNLVKW 770
           DWV  +E+  ++   + H++  P+T+  + P T +  ++ +   N + W
Sbjct: 420 DWVSFIENLSHHDINMNHMDWDPSTANYVLPETNMNINFPEKHTNEIGW 468


>At2g45040.1 68415.m05607 matrix metalloproteinase nearly identical
           to metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 342

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 352 PNWYQIPLINSNASHNLSDGNLVRFRGMI 438
           PN+    L+ S  S NL+DG+ +R +GMI
Sbjct: 299 PNFTLNSLLASETSTNLADGSRIRSQGMI 327


>At5g59500.1 68418.m07457 expressed protein
          Length = 396

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 339 LALHYFFILNPSIRRRCF 286
           LA HYFF  N S+R+R +
Sbjct: 214 LAYHYFFFFNVSVRKRLY 231


>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein predicted proteins,
           Arabidopsis thaliana and Drosophila melanogaster
           contains Pfam profile PF00564: PB1 domain
          Length = 531

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 262 HENIMSDIETTTPDRWIENEKIMKSKLMKLPNWYQIP-LINSNASHNLSDGNLVRFRGMI 438
           + NI  +I TTT     E ++  + ++  +P   Q P  +  +       GN   +   +
Sbjct: 352 NSNIQGNIYTTTSQNLPEQQQ-QQQQVYMIPAQSQAPGTLYQSVMRPTVQGNQGYYPSPV 410

Query: 439 QDMHNPEFYFEK 474
           Q +H+P+ Y E+
Sbjct: 411 QRLHHPDAYMEQ 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,922
Number of Sequences: 28952
Number of extensions: 275064
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)