Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00133
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.5  
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch...    25   7.7  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 90   SRRGQRDPLKGPGTDRALTRLLVYSRHLERTLNWDNVSRLLQTGDSQRA 236
            S  G +  L GPG D+ +T  + +    ++T  W N   L    ++ RA
Sbjct: 1051 SSGGDKTQLNGPGADQPVTATITF----DKTSPWRNRENLSHNNNTTRA 1095


>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 332 DPVEAARGVGGACWKRAC 279
           DP+E    +G A W +AC
Sbjct: 167 DPIETISSIGQASWGKAC 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,517
Number of Sequences: 5004
Number of extensions: 47913
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)