Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00133
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4734| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   3.5  
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             28   8.1  
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      28   8.1  
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_50396| Best HMM Match : Chordopox_A13L (HMM E-Value=5)              28   8.1  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      28   8.1  

>SB_4734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 211 FKQATHSAPAGCCTHLTLLTRYGHARFQHAPPTPRAASTGSCTNYRHSTR 360
           F+ ATH+  A C  +L    RY   + Q+A  T    +     NYRH+ R
Sbjct: 39  FRDATHNIWAACMVYLKCRGRYHSYQNQNATRTFLQFARRIYHNYRHAAR 88


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +3

Query: 90  SRRGQRDPLKGPGTDRALTRLLVYSRHLERTLNWDNVSRLLQTGDSQRAGG 242
           +RRG  DP +G G D  L   +      +R  N DN  R    GD    GG
Sbjct: 152 NRRGGFDPGRGRGYDPTLRSRITSDSTWDRGENNDNNWRFSGRGDEDDGGG 202


>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +3

Query: 84  LRSRRGQRDPLKGPGTDRALTRLLVYSRHLERTLNWDNVSRLLQTGDSQRAGGMLHAPNV 263
           L+SR  +RDPL+ P  D +  R    ++H +   N+D+   L +    QR+    H P+ 
Sbjct: 285 LKSRGKERDPLRHPSRDSSRER----TKHGDGPTNFDD--ELSEYRALQRS--RQHKPSS 336

Query: 264 TNEIRTRS 287
            N  R+RS
Sbjct: 337 RNTSRSRS 344


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 184  SVRSKWRLYTNNLVRARSVPGPLRGSRWPRRLLNCLYG 71
            S+  +W L   +L R R + GP  GSR  +  L+ + G
Sbjct: 2345 SIAEEWSLMERDLTRERGLWGPPHGSRLDKWALDMVEG 2382


>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 646 VDSNETLFQQNNCSVNGGGCCVRTNTTSV-PGRSSASTRTSRMQ 518
           V ++++  Q   C V  G C V+T+ + +   +S   TR S++Q
Sbjct: 206 VQTSKSKIQTRKCKVQTGKCKVQTSKSKIHASKSKIQTRKSKIQ 249


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -1

Query: 172  KWR-LYTNNLVRARSVPGPLRGSRWPRRLLN---CLYGHTSIVPCRDSSRCATSQYR 14
            KW+ L  N++   RSV  PL GSR     +N   C  G TS+    D  R    + R
Sbjct: 2071 KWQSLVINHIQTTRSVDSPLNGSRISSPQINGAICETGTTSLSERTDKPRILEGKKR 2127


>SB_50396| Best HMM Match : Chordopox_A13L (HMM E-Value=5)
          Length = 68

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 542 LNADLKDAGSEISGQLRALIVAVQCGYRIVIHWHFVKHSQD 420
           ++ D+K  G + S   R ++ A++C     I  HFVK S +
Sbjct: 19  MSRDVKTTGRQYSTMKRTMVYALRCMGSDHISTHFVKRSPE 59


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 646 VDSNETLFQQNNCSVNGGGCCVRTNTTSV-PGRSSASTRTSRMQ 518
           V ++++  Q   C V  G C V+T+ + +   +S   TR S++Q
Sbjct: 206 VQTSKSKIQTRKCKVQTGKCKVQTSKSKIHASKSKIQTRKSKIQ 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,994,229
Number of Sequences: 59808
Number of extensions: 431919
Number of successful extensions: 1291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)