Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00133
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC024790-10|AAF60632.2|  129|Caenorhabditis elegans Hypothetical...    28   7.1  
AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical ...    28   7.1  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    27   9.4  
AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 646 VDSNETLFQQNNCSVNGGGCC-VRTNTTSVPGRSSASTRTSRMQGVRLAD 500
           +D+ + +  +NN + N      V+  TT+ P  SSAST T+      LAD
Sbjct: 648 LDTEDPVVTENNTNSNSEQASPVKKKTTAAPVTSSASTNTNATSSDELAD 697


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 100 PRRLLNCLYGHTSIVPCRDSSRCATSQYRR 11
           P+RL NC       + CRD+S C T Q+ R
Sbjct: 91  PQRLPNCESPTPPSLSCRDASACGTWQFSR 120


>AC024790-10|AAF60632.2|  129|Caenorhabditis elegans Hypothetical
           protein Y47D7A.11 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 488 LIVAVQCGYRIVIHWHFVKHSQDRAPPDYATRK 390
           L++ VQCGY +  + +    S    PP Y T K
Sbjct: 11  LVILVQCGYPVAENSYPTTPSYPTPPPSYPTPK 43


>AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical
           protein Y47D7A.2 protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 488 LIVAVQCGYRIVIHWHFVKHSQDRAPPDYATRK 390
           L++ VQCGY +  + +    S    PP Y T K
Sbjct: 11  LVILVQCGYPVAENSYPTTPSYPTPPPSYPTPK 43


>AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D7A.7 protein.
          Length = 121

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 488 LIVAVQCGYRIVIHWHFVKHSQDRAPPDYATRK 390
           L++ VQCGY +  + +    S    PP Y T K
Sbjct: 11  LVILVQCGYPVAENSYPTTPSYPTPPPSYPTPK 43


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 156 VYSRHLERTLNWDNVSRLLQT-GDSQRA 236
           VY+RHL+ T  WD +++ L++ G  Q A
Sbjct: 239 VYTRHLQITGEWDKMNKFLRSIGQYQHA 266


>AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical
           protein F38H12.3 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 572 YNKCTGTLVGLNADLK-DAGSEISGQLRALIVAVQCGYRIV 453
           +NKC   L+  +     DAG E  G++  LI +++CG + +
Sbjct: 341 HNKCMSELMDHSIQRSPDAGPERFGEIILLISSIRCGVKAI 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,091
Number of Sequences: 27780
Number of extensions: 303825
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)