Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00133
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14490.1 68414.m01718 DNA-binding protein-related contains si...    29   2.2  
At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO...    29   2.2  
At1g21350.3 68414.m02671 expressed protein                             29   2.9  
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp...    28   5.0  

>At1g14490.1 68414.m01718 DNA-binding protein-related contains
           similarity to DNA-binding proteins
          Length = 206

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 83  VEESTRPTGPPQGTGDRPRSD*IIGIQPPLRAY 181
           +E   RP G P+G+ ++P++   + I PP+  Y
Sbjct: 1   METVGRPRGRPRGSKNKPKAPIFVTIDPPMSPY 33


>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to p300/CBP acetyltransferase-related protein
           (GI:12597461) [Arabidopsis thaliana];  similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 364

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 178 RSKWRLYTNNLVRARSVPGP 119
           +SKWRL   N++RAR+  GP
Sbjct: 336 QSKWRLLVENIIRARNSLGP 355


>At1g21350.3 68414.m02671 expressed protein
          Length = 252

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = -1

Query: 274 ISLVTLGACSIPPARCESPV*SRRLTLSQFSVRSKWRLYTNNLVRARSVPGPLR 113
           ++ VT GA SI P+R    V SRR     FS  S  RL  +NL R  + P P R
Sbjct: 7   VTTVTHGASSILPSRTALAVSSRR-----FSSFSPSRLDFSNLRRRVNAPSPRR 55


>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
           specific antioxidant / mal allergen family protein
           similar to type 2 peroxiredoxin [Brassica rapa subsp.
           pekinensis] GI:4928472; contains Pfam profiles PF00646:
           F-box domain, PF00578: AhpC/TSA family
          Length = 553

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 296 CWKRACPYLVSNVRCVQHPAG 234
           CW   CPY+ S V+  QH  G
Sbjct: 522 CWPLVCPYVPSVVQIKQHKGG 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,792
Number of Sequences: 28952
Number of extensions: 272724
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)