Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00132
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    27   1.6  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   3.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   3.7  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   4.9  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   4.9  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   6.5  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   6.5  

>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 450 YRVKTGRRYIRLLGTLRYRFRIFDEF-LSLFQYNF*RQLKPQIPL 581
           Y  +  +  I  LG + Y FR FDE   SLF+ NF  +L+ +IP+
Sbjct: 73  YSSEEAKEVIDSLGAIVYTFRSFDEAEWSLFK-NFIDKLQLEIPV 116


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 197 QGATGYWSSFSLVVLGTFPLIVMFLLA 117
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 249 YLEH-SRATHYEDEESKEP 196
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -1

Query: 523  SSKILNRYLNVPNNLMYRRP 464
            ++ +++ Y+N+P+N  YRRP
Sbjct: 1463 ANNMIDMYINLPSNNRYRRP 1482


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 578 WNLWLELSLKIILKKRQKFIE 516
           WN+WL    KI  K++ KF E
Sbjct: 370 WNMWLSQVQKINEKEKDKFYE 390


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 105 RQRDRQ*KHHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPSIRLA 269
           + + RQ K + E       + ++R I C  L PC   ++S   C  P++P  R A
Sbjct: 2   QMKPRQDKKNQEIFRISCQRCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRRRA 56


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 261 LLMDYLEHSRATHYEDEESKEP 196
           LL D+ EHSRA H  D  S  P
Sbjct: 126 LLYDFNEHSRAVHKLDISSFHP 147


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 608 KTITLFITF*WNLWLELSLKI 546
           K+  L   F W+ WLELSL I
Sbjct: 197 KSCVLKAPFFWSAWLELSLSI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,641
Number of Sequences: 5004
Number of extensions: 53876
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)