Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00132
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27350.1 68414.m03331 expressed protein contains 1 transmembr... 56 2e-08
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6... 56 2e-08
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 29 1.8
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 29 1.8
At1g31960.1 68414.m03929 hypothetical protein 29 3.2
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 28 4.2
At1g08230.1 68414.m00909 amino acid transporter family protein l... 28 4.2
At5g35010.1 68418.m04132 hypothetical protein similar to At3g243... 27 9.8
At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu... 27 9.8
>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
domain; similar to ribosome associated membrane protein
RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
gb|T20610 and gb|AA586199
Length = 68
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/43 (60%), Positives = 31/43 (72%)
Frame = +1
Query: 124 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 252
KNI RG VP+TT +K YPV P LL F+FVV GS++FQII
Sbjct: 17 KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 59
>At1g27330.1 68414.m03329 expressed protein similar to EST
gb|AA650671 and gb|T20610
Length = 68
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/43 (60%), Positives = 31/43 (72%)
Frame = +1
Query: 124 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 252
KNI RG VP+TT +K YPV P LL F+FVV GS++FQII
Sbjct: 17 KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 59
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 129 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCV 242
+++ T Q KR+ ISC + P S L S+W C+
Sbjct: 82 NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCL 119
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 129 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCV 242
+++ T Q KR+ ISC + P S L S+W C+
Sbjct: 82 NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCL 119
>At1g31960.1 68414.m03929 hypothetical protein
Length = 173
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 458 NPVSVKETSSHDCTVKGTNGRLRKHSL 378
NP S++ D VKG+NG +R HS+
Sbjct: 105 NPTSIRRKLFDDAGVKGSNGVVRFHSV 131
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 132 HNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPS 257
H+ T KR+ I+C + P S L S+W C+ N S
Sbjct: 76 HDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNIS 117
>At1g08230.1 68414.m00909 amino acid transporter family protein low
similarity to amino acid permease [Oryza sativa]
GI:7415521; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 332
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -2
Query: 588 YILMEFVA*VVFKNYIEKETKIHRKF*IDTSTSLITLCIGV 466
+I ++FV VVF N+ K +K F I+T +++ C+GV
Sbjct: 269 FIPLDFVLPVVFFNFTFKPSKKSFIFWINTVIAVVFSCLGV 309
>At5g35010.1 68418.m04132 hypothetical protein similar to At3g24380,
At5g36840, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 230
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 378 ERVFSEAAISTFNCAIVA*CLFHTYRVKTGRRYIRLLGTLRY 503
ER+ A +TF CAI+ C + + G Y+RL G+ Y
Sbjct: 115 ERIAPRNAAATFTCAILYICAGNAH---MGGVYLRLFGSNHY 153
>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]; contains Pfam profiles
PF00005: ABC transporter and PF00664: ABC transporter
transmembrane region; identical to cDNA MDR-like
p-glycoprotein (At3g28860) GI:24324261
Length = 1252
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3
Query: 167 SLVVLGTFPLIVMFLLAISLAIR 99
SL++LGTFPL+V+ A L+++
Sbjct: 833 SLLILGTFPLLVLANFAQQLSLK 855
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,344
Number of Sequences: 28952
Number of extensions: 277835
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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