Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00131X
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    24   0.54 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.6  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 59  TLVNKRSTAASCTRQLKVFLNLKTINVFLPLVV 157
           T V K+   A   + LKV    KT   FLP VV
Sbjct: 84  TTVRKQQQWAQLIQNLKVVATTKTKAWFLPFVV 116


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 177 LTFHCLRTTNGRKTLMVFKFRNTLSCRVHEAAVERLFTR 61
           +TF CL++   R  L V K R      +++  ++R+ +R
Sbjct: 527 VTFQCLKSIAWRAFLAVLKRRT----EIYKGLIDRIKSR 561


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 94  YSTTQSIPKLED 129
           Y T Q++P+LED
Sbjct: 157 YETFQNLPELED 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,481
Number of Sequences: 336
Number of extensions: 1476
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)