Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00131X
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0393 + 17255315-17256019,17256107-17257909 32 0.23
03_02_0198 + 6344952-6347483 28 3.7
08_01_0391 + 3443989-3444219 27 4.9
06_03_1199 - 28339942-28340703 27 4.9
05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110 27 4.9
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 27 6.5
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 8.6
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639... 27 8.6
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 27 8.6
>09_04_0393 + 17255315-17256019,17256107-17257909
Length = 835
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 200 RRTKMHDDEQTLAGVRSALIAECESVQEFLTDCD--DSSNPAPVELKVLLPDRDVATVSV 373
R+ + H ++Q G S IA+ +V+ T D SSN P + ++LLP D ++
Sbjct: 749 RKRRAHHEKQRNTGEVSLPIAQISNVKNTSTSFDAVGSSNSNPYKYRMLLPRADTIATTI 808
Query: 374 LRS 382
S
Sbjct: 809 AES 811
>03_02_0198 + 6344952-6347483
Length = 843
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 275 VQEFLTDCDDSSNPAPVELKVLLPDRDVATVSVL 376
V FLT DS NPAP +++ R +A +L
Sbjct: 183 VHSFLTSWTDSENPAPGAFSMVIDARGLAKFDLL 216
>08_01_0391 + 3443989-3444219
Length = 76
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 237 ASVCSSSCILV-LRAEXSKSVLTFHCLRTT 151
A +C SC L+ + A + S+L F CL TT
Sbjct: 43 ADLCCCSCALIGIAATVAASLLAFKCLLTT 72
>06_03_1199 - 28339942-28340703
Length = 253
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 212 MHDDEQTL-AGVRSALIAECESVQEFLTDCDDSSNPAPVELKVLLPDRDVATVSV 373
+HD +TL G R + EC EF+ + S V+ K LPD D S+
Sbjct: 110 LHDTIETLHIGYRKDVPFECRYANEFVALANASRLELHVQCKRGLPDEDAGVWSL 164
>05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110
Length = 286
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 215 HDDEQTLA-GVRSALIAECESVQEFLTDCDDSSNPA 319
HD E+ A GV SA+IA + DCDD+ + A
Sbjct: 166 HDHERGNAHGVSSAVIASATMPNDAADDCDDAEDRA 201
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 78 ERLFTRVVRSTTGKGCILIKLTISYK 1
ERL R R+T G GC+L I YK
Sbjct: 80 ERLSIRERRTTAGLGCLLYLSLIGYK 105
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 233 LAGVRSALIAECESVQEFLTDCDDSSNPAPVELKVLLPDRDVATVSVLRST 385
+A V + I + ES C +P +L + PD +A LRST
Sbjct: 335 IANVTTKNIGKLESSYSLTFKCSSGISPVEEQLYTMKPDEVIARSFELRST 385
>03_05_0916 -
28762214-28762414,28763144-28763242,28763573-28763998,
28764259-28764501,28764706-28764927,28765392-28765721,
28767380-28767800,28768292-28768404,28769224-28769367,
28769439-28769570,28769802-28770013,28770983-28771505
Length = 1021
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = +2
Query: 215 HDDEQTLAGVRSALIAECESVQEFLTDCDDSSNPAPVELKVLLPDRDVATVSVLRSTRAD 394
HD Q L + + ++ + +S + +P+E+K + + +A V L R
Sbjct: 421 HDRLQDLPELARESSDVTDDMEPYSLQLHESDDKSPLEIKKMSHNALIALVKYLHKKRNG 480
Query: 395 LVYRAVAD 418
++ RA A+
Sbjct: 481 IIERATAE 488
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 224 EQTLAGVRSALIAECESVQEFLTDCDDSSNPAPVELKVLLPDRDVATVSVLRSTRADL 397
E+ L + + E ES+ D + NP ELK L +D+ V++L + A+L
Sbjct: 275 EKELEEEETKKMIEEESIDATAIDSGEKENPEVAELKAKLMAKDM-EVAILTADNAEL 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,397,369
Number of Sequences: 37544
Number of extensions: 164988
Number of successful extensions: 405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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